Experiment: 6 days starvation 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2743 and DvMF_2744 are separated by 190 nucleotides DvMF_2744 and DvMF_2745 are separated by 41 nucleotides DvMF_2745 and DvMF_2746 are separated by 53 nucleotides DvMF_2746 and DvMF_2747 are separated by 53 nucleotides DvMF_2747 and DvMF_2748 are separated by 493 nucleotides
DvMF_2743: DvMF_2743 - peptidase A24A prepilin type IV (RefSeq), at 3,469,688 to 3,470,278
_2743
DvMF_2744: DvMF_2744 - Flp/Fap pilin component (RefSeq), at 3,470,469 to 3,470,645
_2744
DvMF_2745: DvMF_2745 - Flp/Fap pilin component (RefSeq), at 3,470,687 to 3,470,863
_2745
DvMF_2746: DvMF_2746 - Flp/Fap pilin component (RefSeq), at 3,470,917 to 3,471,093
_2746
DvMF_2747: DvMF_2747 - Flp/Fap pilin component (RefSeq), at 3,471,147 to 3,471,323
_2747
DvMF_2748: DvMF_2748 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 3,471,817 to 3,473,445
_2748
Position (kb)
3470
3471
3472 Strain fitness (log2 ratio)
-1
0
1 at 3470.099 kb on + strand, within DvMF_2743 at 3470.873 kb on + strand at 3470.893 kb on + strand at 3470.894 kb on - strand at 3470.971 kb on - strand, within DvMF_2746 at 3471.310 kb on - strand at 3471.481 kb on + strand at 3471.700 kb on + strand at 3471.733 kb on + strand at 3471.734 kb on + strand at 3471.753 kb on - strand at 3471.878 kb on + strand at 3472.086 kb on - strand, within DvMF_2748
Per-strain Table
Position Strand Gene LocusTag Fraction 6 days starvation 37C remove 3,470,099 + DvMF_2743 0.70 +0.9 3,470,873 + -0.6 3,470,893 + -0.3 3,470,894 - -1.1 3,470,971 - DvMF_2746 0.31 +0.2 3,471,310 - -0.6 3,471,481 + +0.3 3,471,700 + -0.6 3,471,733 + -0.3 3,471,734 + -0.1 3,471,753 - -0.7 3,471,878 + -0.4 3,472,086 - DvMF_2748 0.17 -1.1
Or see this region's nucleotide sequence