Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2746

Experiment: 6 days starvation 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2743 and DvMF_2744 are separated by 190 nucleotidesDvMF_2744 and DvMF_2745 are separated by 41 nucleotidesDvMF_2745 and DvMF_2746 are separated by 53 nucleotidesDvMF_2746 and DvMF_2747 are separated by 53 nucleotidesDvMF_2747 and DvMF_2748 are separated by 493 nucleotides DvMF_2743: DvMF_2743 - peptidase A24A prepilin type IV (RefSeq), at 3,469,688 to 3,470,278 _2743 DvMF_2744: DvMF_2744 - Flp/Fap pilin component (RefSeq), at 3,470,469 to 3,470,645 _2744 DvMF_2745: DvMF_2745 - Flp/Fap pilin component (RefSeq), at 3,470,687 to 3,470,863 _2745 DvMF_2746: DvMF_2746 - Flp/Fap pilin component (RefSeq), at 3,470,917 to 3,471,093 _2746 DvMF_2747: DvMF_2747 - Flp/Fap pilin component (RefSeq), at 3,471,147 to 3,471,323 _2747 DvMF_2748: DvMF_2748 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 3,471,817 to 3,473,445 _2748 Position (kb) 3470 3471 3472Strain fitness (log2 ratio) -1 0 1at 3470.099 kb on + strand, within DvMF_2743at 3470.873 kb on + strandat 3470.893 kb on + strandat 3470.894 kb on - strandat 3470.971 kb on - strand, within DvMF_2746at 3471.310 kb on - strandat 3471.481 kb on + strandat 3471.700 kb on + strandat 3471.733 kb on + strandat 3471.734 kb on + strandat 3471.753 kb on - strandat 3471.878 kb on + strandat 3472.086 kb on - strand, within DvMF_2748

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Per-strain Table

Position Strand Gene LocusTag Fraction 6 days starvation 37C
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3,470,099 + DvMF_2743 0.70 +0.9
3,470,873 + -0.6
3,470,893 + -0.3
3,470,894 - -1.1
3,470,971 - DvMF_2746 0.31 +0.2
3,471,310 - -0.6
3,471,481 + +0.3
3,471,700 + -0.6
3,471,733 + -0.3
3,471,734 + -0.1
3,471,753 - -0.7
3,471,878 + -0.4
3,472,086 - DvMF_2748 0.17 -1.1

Or see this region's nucleotide sequence