Experiment: 6 days starvation 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2666 and DvMF_2667 are separated by 75 nucleotides DvMF_2667 and DvMF_2668 are separated by 279 nucleotides
DvMF_2666: DvMF_2666 - protein of unknown function UPF0047 (RefSeq), at 3,369,374 to 3,369,790
_2666
DvMF_2667: DvMF_2667 - hypothetical protein (RefSeq), at 3,369,866 to 3,370,837
_2667
DvMF_2668: DvMF_2668 - type IV pilus assembly PilZ (RefSeq), at 3,371,117 to 3,371,827
_2668
Position (kb)
3369
3370
3371 Strain fitness (log2 ratio)
-2
-1
0
1 at 3369.236 kb on + strand at 3369.244 kb on - strand at 3369.253 kb on - strand at 3369.259 kb on + strand at 3369.493 kb on + strand, within DvMF_2666 at 3369.608 kb on + strand, within DvMF_2666 at 3369.652 kb on + strand, within DvMF_2666 at 3369.652 kb on + strand, within DvMF_2666 at 3369.703 kb on + strand, within DvMF_2666 at 3369.705 kb on + strand, within DvMF_2666 at 3369.892 kb on - strand at 3369.892 kb on - strand at 3370.014 kb on + strand, within DvMF_2667 at 3370.022 kb on - strand, within DvMF_2667 at 3370.022 kb on - strand, within DvMF_2667 at 3370.027 kb on - strand, within DvMF_2667 at 3370.246 kb on - strand, within DvMF_2667 at 3370.393 kb on + strand, within DvMF_2667 at 3370.475 kb on + strand, within DvMF_2667 at 3370.544 kb on - strand, within DvMF_2667 at 3370.549 kb on - strand, within DvMF_2667 at 3370.810 kb on + strand at 3370.811 kb on - strand at 3370.934 kb on - strand at 3371.022 kb on - strand at 3371.148 kb on + strand at 3371.172 kb on + strand at 3371.311 kb on + strand, within DvMF_2668
Per-strain Table
Position Strand Gene LocusTag Fraction 6 days starvation 37C remove 3,369,236 + -0.7 3,369,244 - +0.8 3,369,253 - +0.5 3,369,259 + -0.1 3,369,493 + DvMF_2666 0.29 -1.1 3,369,608 + DvMF_2666 0.56 -0.8 3,369,652 + DvMF_2666 0.67 -1.0 3,369,652 + DvMF_2666 0.67 -0.7 3,369,703 + DvMF_2666 0.79 -0.7 3,369,705 + DvMF_2666 0.79 +0.1 3,369,892 - +0.5 3,369,892 - +0.2 3,370,014 + DvMF_2667 0.15 +0.0 3,370,022 - DvMF_2667 0.16 -0.7 3,370,022 - DvMF_2667 0.16 -0.7 3,370,027 - DvMF_2667 0.17 -0.6 3,370,246 - DvMF_2667 0.39 -0.6 3,370,393 + DvMF_2667 0.54 +0.8 3,370,475 + DvMF_2667 0.63 -0.5 3,370,544 - DvMF_2667 0.70 -0.5 3,370,549 - DvMF_2667 0.70 -0.0 3,370,810 + +0.3 3,370,811 - -0.8 3,370,934 - -1.0 3,371,022 - +0.2 3,371,148 + +0.8 3,371,172 + +0.0 3,371,311 + DvMF_2668 0.27 -1.8
Or see this region's nucleotide sequence