Experiment: 6 days starvation 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2485 and DvMF_2486 overlap by 10 nucleotides DvMF_2486 and DvMF_2487 overlap by 4 nucleotides DvMF_2487 and DvMF_2488 are separated by 5 nucleotides
DvMF_2485: DvMF_2485 - ABC transporter related (RefSeq), at 3,137,784 to 3,138,614
_2485
DvMF_2486: DvMF_2486 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 3,138,605 to 3,139,561
_2486
DvMF_2487: DvMF_2487 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 3,139,558 to 3,140,505
_2487
DvMF_2488: DvMF_2488 - phosphate binding protein (RefSeq), at 3,140,511 to 3,141,353
_2488
Position (kb)
3138
3139
3140 Strain fitness (log2 ratio)
-2
-1
0
1 at 3137.644 kb on - strand at 3137.684 kb on - strand at 3137.707 kb on + strand at 3137.734 kb on + strand at 3137.914 kb on - strand, within DvMF_2485 at 3138.001 kb on + strand, within DvMF_2485 at 3138.131 kb on + strand, within DvMF_2485 at 3138.234 kb on - strand, within DvMF_2485 at 3138.290 kb on - strand, within DvMF_2485 at 3138.336 kb on - strand, within DvMF_2485 at 3138.370 kb on + strand, within DvMF_2485 at 3138.378 kb on - strand, within DvMF_2485 at 3138.387 kb on + strand, within DvMF_2485 at 3138.581 kb on + strand at 3138.738 kb on + strand, within DvMF_2486 at 3138.748 kb on + strand, within DvMF_2486 at 3138.816 kb on + strand, within DvMF_2486 at 3138.819 kb on - strand, within DvMF_2486 at 3138.819 kb on - strand, within DvMF_2486 at 3138.872 kb on - strand, within DvMF_2486 at 3138.878 kb on - strand, within DvMF_2486 at 3138.880 kb on + strand, within DvMF_2486 at 3138.960 kb on - strand, within DvMF_2486 at 3138.971 kb on - strand, within DvMF_2486 at 3139.074 kb on + strand, within DvMF_2486 at 3139.105 kb on + strand, within DvMF_2486 at 3139.244 kb on + strand, within DvMF_2486 at 3139.276 kb on + strand, within DvMF_2486 at 3139.284 kb on - strand, within DvMF_2486 at 3139.367 kb on - strand, within DvMF_2486 at 3139.376 kb on + strand, within DvMF_2486 at 3139.698 kb on - strand, within DvMF_2487 at 3139.725 kb on + strand, within DvMF_2487 at 3139.993 kb on + strand, within DvMF_2487 at 3140.025 kb on + strand, within DvMF_2487 at 3140.025 kb on + strand, within DvMF_2487 at 3140.035 kb on - strand, within DvMF_2487 at 3140.298 kb on - strand, within DvMF_2487 at 3140.340 kb on - strand, within DvMF_2487 at 3140.368 kb on + strand, within DvMF_2487 at 3140.403 kb on - strand, within DvMF_2487 at 3140.487 kb on + strand at 3140.525 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 6 days starvation 37C remove 3,137,644 - -0.9 3,137,684 - -0.8 3,137,707 + -0.9 3,137,734 + +0.2 3,137,914 - DvMF_2485 0.16 -0.3 3,138,001 + DvMF_2485 0.26 -1.0 3,138,131 + DvMF_2485 0.42 -0.4 3,138,234 - DvMF_2485 0.54 -1.3 3,138,290 - DvMF_2485 0.61 -1.0 3,138,336 - DvMF_2485 0.66 -0.1 3,138,370 + DvMF_2485 0.71 -1.4 3,138,378 - DvMF_2485 0.71 -0.4 3,138,387 + DvMF_2485 0.73 -0.6 3,138,581 + +0.4 3,138,738 + DvMF_2486 0.14 -0.6 3,138,748 + DvMF_2486 0.15 -0.2 3,138,816 + DvMF_2486 0.22 -1.3 3,138,819 - DvMF_2486 0.22 -1.6 3,138,819 - DvMF_2486 0.22 -0.8 3,138,872 - DvMF_2486 0.28 +0.8 3,138,878 - DvMF_2486 0.29 +0.1 3,138,880 + DvMF_2486 0.29 -2.0 3,138,960 - DvMF_2486 0.37 +0.4 3,138,971 - DvMF_2486 0.38 -0.6 3,139,074 + DvMF_2486 0.49 -0.6 3,139,105 + DvMF_2486 0.52 -0.3 3,139,244 + DvMF_2486 0.67 -0.9 3,139,276 + DvMF_2486 0.70 -1.1 3,139,284 - DvMF_2486 0.71 +0.3 3,139,367 - DvMF_2486 0.80 +1.1 3,139,376 + DvMF_2486 0.81 -0.9 3,139,698 - DvMF_2487 0.15 -0.4 3,139,725 + DvMF_2487 0.18 -0.7 3,139,993 + DvMF_2487 0.46 -0.9 3,140,025 + DvMF_2487 0.49 -0.4 3,140,025 + DvMF_2487 0.49 -0.8 3,140,035 - DvMF_2487 0.50 -0.5 3,140,298 - DvMF_2487 0.78 -0.8 3,140,340 - DvMF_2487 0.82 -0.5 3,140,368 + DvMF_2487 0.85 -0.8 3,140,403 - DvMF_2487 0.89 -0.3 3,140,487 + -0.8 3,140,525 - -0.6
Or see this region's nucleotide sequence