Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2291

Experiment: 6 days starvation 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2290 and DvMF_2291 are separated by 249 nucleotidesDvMF_2291 and DvMF_2292 are separated by 21 nucleotides DvMF_2290: DvMF_2290 - flagellar protein export ATPase FliI (RefSeq), at 2,877,968 to 2,879,374 _2290 DvMF_2291: DvMF_2291 - phosphoesterase PA-phosphatase related (RefSeq), at 2,879,624 to 2,880,376 _2291 DvMF_2292: DvMF_2292 - Peptidase M23 (RefSeq), at 2,880,398 to 2,881,300 _2292 Position (kb) 2879 2880 2881Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2878.866 kb on + strand, within DvMF_2290at 2878.905 kb on - strand, within DvMF_2290at 2878.905 kb on - strand, within DvMF_2290at 2879.295 kb on - strandat 2879.713 kb on + strand, within DvMF_2291at 2879.729 kb on - strand, within DvMF_2291at 2879.729 kb on - strand, within DvMF_2291at 2879.914 kb on - strand, within DvMF_2291at 2879.988 kb on - strand, within DvMF_2291at 2880.082 kb on - strand, within DvMF_2291at 2880.176 kb on + strand, within DvMF_2291at 2880.184 kb on - strand, within DvMF_2291at 2880.328 kb on + strandat 2880.336 kb on - strandat 2881.349 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 6 days starvation 37C
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2,878,866 + DvMF_2290 0.64 +2.2
2,878,905 - DvMF_2290 0.67 +2.3
2,878,905 - DvMF_2290 0.67 +1.9
2,879,295 - +2.5
2,879,713 + DvMF_2291 0.12 -2.4
2,879,729 - DvMF_2291 0.14 -2.5
2,879,729 - DvMF_2291 0.14 -3.7
2,879,914 - DvMF_2291 0.39 -1.4
2,879,988 - DvMF_2291 0.48 -1.6
2,880,082 - DvMF_2291 0.61 -2.0
2,880,176 + DvMF_2291 0.73 -3.4
2,880,184 - DvMF_2291 0.74 -1.1
2,880,328 + -0.2
2,880,336 - -0.8
2,881,349 + -2.3

Or see this region's nucleotide sequence