Experiment: 6 days starvation 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2122 and DvMF_2123 are separated by 384 nucleotides DvMF_2123 and DvMF_2124 are separated by 236 nucleotides
DvMF_2122: DvMF_2122 - nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase (RefSeq), at 2,640,719 to 2,641,798
_2122
DvMF_2123: DvMF_2123 - chromosome replication initiation inhibitor protein (RefSeq), at 2,642,183 to 2,643,145
_2123
DvMF_2124: DvMF_2124 - Lysine exporter protein (LYSE/YGGA) (RefSeq), at 2,643,382 to 2,644,011
_2124
Position (kb)
2642
2643
2644 Strain fitness (log2 ratio)
-2
-1
0
1 at 2641.300 kb on - strand, within DvMF_2122 at 2641.305 kb on - strand, within DvMF_2122 at 2641.903 kb on - strand at 2642.236 kb on - strand at 2642.265 kb on - strand at 2642.276 kb on - strand at 2642.454 kb on - strand, within DvMF_2123 at 2642.455 kb on + strand, within DvMF_2123 at 2642.542 kb on - strand, within DvMF_2123 at 2642.542 kb on - strand, within DvMF_2123 at 2642.981 kb on + strand, within DvMF_2123 at 2643.209 kb on + strand at 2643.209 kb on + strand at 2643.217 kb on - strand at 2643.256 kb on + strand at 2643.292 kb on + strand at 2643.465 kb on + strand, within DvMF_2124 at 2643.930 kb on - strand, within DvMF_2124 at 2643.963 kb on + strand at 2644.055 kb on + strand at 2644.063 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 6 days starvation 37C remove 2,641,300 - DvMF_2122 0.54 -2.3 2,641,305 - DvMF_2122 0.54 -1.9 2,641,903 - -1.6 2,642,236 - -0.1 2,642,265 - -0.5 2,642,276 - -1.5 2,642,454 - DvMF_2123 0.28 -0.5 2,642,455 + DvMF_2123 0.28 -2.2 2,642,542 - DvMF_2123 0.37 -0.0 2,642,542 - DvMF_2123 0.37 -0.6 2,642,981 + DvMF_2123 0.83 +0.7 2,643,209 + -0.4 2,643,209 + +0.2 2,643,217 - -0.4 2,643,256 + -2.7 2,643,292 + -0.3 2,643,465 + DvMF_2124 0.13 -1.4 2,643,930 - DvMF_2124 0.87 -0.4 2,643,963 + -0.5 2,644,055 + -1.6 2,644,063 - -1.0
Or see this region's nucleotide sequence