Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1924

Experiment: 6 days starvation 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1923 and DvMF_1924 are separated by 153 nucleotidesDvMF_1924 and DvMF_1925 overlap by 16 nucleotides DvMF_1923: DvMF_1923 - glycosyl transferase family 2 (RefSeq), at 2,371,248 to 2,372,399 _1923 DvMF_1924: DvMF_1924 - ABC transporter related (RefSeq), at 2,372,553 to 2,373,755 _1924 DvMF_1925: DvMF_1925 - aminoglycoside phosphotransferase (RefSeq), at 2,373,740 to 2,375,062 _1925 Position (kb) 2372 2373 2374Strain fitness (log2 ratio) -2 -1 0 1at 2372.116 kb on - strand, within DvMF_1923at 2372.333 kb on + strandat 2372.341 kb on - strandat 2372.603 kb on + strandat 2373.120 kb on - strand, within DvMF_1924at 2373.306 kb on + strand, within DvMF_1924at 2373.411 kb on + strand, within DvMF_1924at 2373.424 kb on - strand, within DvMF_1924at 2373.475 kb on - strand, within DvMF_1924at 2373.489 kb on + strand, within DvMF_1924at 2373.544 kb on + strand, within DvMF_1924at 2373.552 kb on - strand, within DvMF_1924at 2373.792 kb on - strandat 2373.931 kb on + strand, within DvMF_1925at 2373.946 kb on + strand, within DvMF_1925at 2373.949 kb on - strand, within DvMF_1925at 2374.015 kb on + strand, within DvMF_1925at 2374.136 kb on - strand, within DvMF_1925at 2374.384 kb on + strand, within DvMF_1925at 2374.722 kb on - strand, within DvMF_1925

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Per-strain Table

Position Strand Gene LocusTag Fraction 6 days starvation 37C
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2,372,116 - DvMF_1923 0.75 -0.4
2,372,333 + -0.3
2,372,341 - -0.7
2,372,603 + -1.6
2,373,120 - DvMF_1924 0.47 -1.3
2,373,306 + DvMF_1924 0.63 -1.1
2,373,411 + DvMF_1924 0.71 -0.6
2,373,424 - DvMF_1924 0.72 -0.6
2,373,475 - DvMF_1924 0.77 -2.0
2,373,489 + DvMF_1924 0.78 -0.9
2,373,544 + DvMF_1924 0.82 -1.4
2,373,552 - DvMF_1924 0.83 -0.5
2,373,792 - -1.2
2,373,931 + DvMF_1925 0.14 -1.5
2,373,946 + DvMF_1925 0.16 -0.7
2,373,949 - DvMF_1925 0.16 +0.0
2,374,015 + DvMF_1925 0.21 -1.5
2,374,136 - DvMF_1925 0.30 -0.7
2,374,384 + DvMF_1925 0.49 -0.8
2,374,722 - DvMF_1925 0.74 +0.5

Or see this region's nucleotide sequence