Experiment: 6 days starvation 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1886 and DvMF_1887 are separated by 188 nucleotides DvMF_1887 and DvMF_1888 are separated by 85 nucleotides DvMF_1888 and DvMF_1889 are separated by 8 nucleotides
DvMF_1886: DvMF_1886 - HesB/YadR/YfhF-family protein (RefSeq), at 2,323,072 to 2,323,395
_1886
DvMF_1887: DvMF_1887 - glycosyl transferase family 2 (RefSeq), at 2,323,584 to 2,324,645
_1887
DvMF_1888: DvMF_1888 - DNA-3-methyladenine glycosylase I (RefSeq), at 2,324,731 to 2,325,333
_1888
DvMF_1889: DvMF_1889 - hypothetical protein (RefSeq), at 2,325,342 to 2,325,821
_1889
Position (kb)
2323
2324
2325 Strain fitness (log2 ratio)
-2
-1
0
1 at 2322.685 kb on + strand at 2322.709 kb on + strand at 2322.713 kb on - strand at 2322.931 kb on - strand at 2323.152 kb on - strand, within DvMF_1886 at 2323.184 kb on + strand, within DvMF_1886 at 2323.292 kb on - strand, within DvMF_1886 at 2323.591 kb on - strand at 2323.693 kb on + strand, within DvMF_1887 at 2324.005 kb on + strand, within DvMF_1887 at 2324.014 kb on - strand, within DvMF_1887 at 2324.171 kb on + strand, within DvMF_1887 at 2324.215 kb on + strand, within DvMF_1887 at 2324.411 kb on + strand, within DvMF_1887 at 2324.411 kb on + strand, within DvMF_1887 at 2324.419 kb on - strand, within DvMF_1887 at 2324.558 kb on + strand at 2324.639 kb on + strand at 2324.639 kb on + strand at 2324.647 kb on - strand at 2324.696 kb on - strand at 2324.717 kb on - strand at 2324.833 kb on - strand, within DvMF_1888 at 2324.937 kb on - strand, within DvMF_1888 at 2325.068 kb on + strand, within DvMF_1888 at 2325.099 kb on + strand, within DvMF_1888 at 2325.103 kb on - strand, within DvMF_1888 at 2325.112 kb on - strand, within DvMF_1888 at 2325.158 kb on + strand, within DvMF_1888 at 2325.294 kb on + strand at 2325.398 kb on - strand, within DvMF_1889 at 2325.567 kb on + strand, within DvMF_1889 at 2325.587 kb on - strand, within DvMF_1889
Per-strain Table
Position Strand Gene LocusTag Fraction 6 days starvation 37C remove 2,322,685 + -0.8 2,322,709 + -0.9 2,322,713 - -0.9 2,322,931 - -1.1 2,323,152 - DvMF_1886 0.25 -0.1 2,323,184 + DvMF_1886 0.35 +0.6 2,323,292 - DvMF_1886 0.68 +0.2 2,323,591 - -2.7 2,323,693 + DvMF_1887 0.10 -2.4 2,324,005 + DvMF_1887 0.40 -0.8 2,324,014 - DvMF_1887 0.40 -1.2 2,324,171 + DvMF_1887 0.55 -0.5 2,324,215 + DvMF_1887 0.59 +0.1 2,324,411 + DvMF_1887 0.78 -0.6 2,324,411 + DvMF_1887 0.78 -1.6 2,324,419 - DvMF_1887 0.79 -0.4 2,324,558 + -0.4 2,324,639 + -0.8 2,324,639 + -0.7 2,324,647 - -0.2 2,324,696 - -0.6 2,324,717 - -0.8 2,324,833 - DvMF_1888 0.17 -0.4 2,324,937 - DvMF_1888 0.34 -0.0 2,325,068 + DvMF_1888 0.56 -0.9 2,325,099 + DvMF_1888 0.61 -1.3 2,325,103 - DvMF_1888 0.62 -0.9 2,325,112 - DvMF_1888 0.63 -0.3 2,325,158 + DvMF_1888 0.71 -0.7 2,325,294 + -0.6 2,325,398 - DvMF_1889 0.12 -1.0 2,325,567 + DvMF_1889 0.47 +0.5 2,325,587 - DvMF_1889 0.51 -0.9
Or see this region's nucleotide sequence