Experiment: 6 days starvation 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1720 and DvMF_1721 are separated by 317 nucleotides DvMF_1721 and DvMF_1722 are separated by 500 nucleotides
DvMF_1720: DvMF_1720 - diguanylate phosphodiesterase (RefSeq), at 2,103,157 to 2,104,395
_1720
DvMF_1721: DvMF_1721 - Phenylacetate--CoA ligase (RefSeq), at 2,104,713 to 2,106,008
_1721
DvMF_1722: DvMF_1722 - phosphoribosylamine--glycine ligase (RefSeq), at 2,106,509 to 2,107,786
_1722
Position (kb)
2104
2105
2106
2107 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2103.845 kb on - strand, within DvMF_1720 at 2103.918 kb on - strand, within DvMF_1720 at 2103.940 kb on + strand, within DvMF_1720 at 2104.260 kb on + strand, within DvMF_1720 at 2104.339 kb on + strand at 2104.417 kb on + strand at 2104.996 kb on - strand, within DvMF_1721 at 2105.206 kb on - strand, within DvMF_1721 at 2105.236 kb on + strand, within DvMF_1721 at 2105.241 kb on + strand, within DvMF_1721 at 2105.244 kb on - strand, within DvMF_1721 at 2105.451 kb on - strand, within DvMF_1721 at 2105.472 kb on + strand, within DvMF_1721 at 2105.604 kb on + strand, within DvMF_1721 at 2105.675 kb on + strand, within DvMF_1721 at 2105.847 kb on - strand, within DvMF_1721 at 2105.851 kb on + strand, within DvMF_1721 at 2105.932 kb on + strand at 2105.932 kb on + strand at 2105.932 kb on + strand at 2105.932 kb on + strand at 2105.940 kb on - strand at 2105.940 kb on - strand at 2105.944 kb on + strand at 2105.961 kb on + strand at 2106.547 kb on + strand at 2106.819 kb on - strand, within DvMF_1722 at 2106.882 kb on + strand, within DvMF_1722
Per-strain Table
Position Strand Gene LocusTag Fraction 6 days starvation 37C remove 2,103,845 - DvMF_1720 0.56 -0.0 2,103,918 - DvMF_1720 0.61 +0.0 2,103,940 + DvMF_1720 0.63 -0.7 2,104,260 + DvMF_1720 0.89 -0.4 2,104,339 + -0.6 2,104,417 + -0.7 2,104,996 - DvMF_1721 0.22 -0.4 2,105,206 - DvMF_1721 0.38 -1.6 2,105,236 + DvMF_1721 0.40 -0.7 2,105,241 + DvMF_1721 0.41 -1.1 2,105,244 - DvMF_1721 0.41 +0.0 2,105,451 - DvMF_1721 0.57 -0.7 2,105,472 + DvMF_1721 0.59 -1.0 2,105,604 + DvMF_1721 0.69 -0.4 2,105,675 + DvMF_1721 0.74 -0.7 2,105,847 - DvMF_1721 0.88 -1.1 2,105,851 + DvMF_1721 0.88 +0.2 2,105,932 + -0.4 2,105,932 + -0.0 2,105,932 + -0.9 2,105,932 + -0.8 2,105,940 - -0.9 2,105,940 - -1.7 2,105,944 + -0.7 2,105,961 + -0.8 2,106,547 + -3.6 2,106,819 - DvMF_1722 0.24 -4.3 2,106,882 + DvMF_1722 0.29 -3.6
Or see this region's nucleotide sequence