Experiment: 6 days starvation 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1527 and DvMF_1528 are separated by 507 nucleotides DvMF_1528 and DvMF_1529 are separated by 72 nucleotides DvMF_1529 and DvMF_1530 are separated by 371 nucleotides
DvMF_1527: DvMF_1527 - hypothetical protein (RefSeq), at 1,881,861 to 1,882,715
_1527
DvMF_1528: DvMF_1528 - phospholipase D/Transphosphatidylase (RefSeq), at 1,883,223 to 1,884,692
_1528
DvMF_1529: DvMF_1529 - UspA domain protein (RefSeq), at 1,884,765 to 1,885,190
_1529
DvMF_1530: DvMF_1530 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq), at 1,885,562 to 1,888,252
_1530
Position (kb)
1883
1884
1885 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1882.234 kb on + strand, within DvMF_1527 at 1882.403 kb on - strand, within DvMF_1527 at 1882.462 kb on - strand, within DvMF_1527 at 1883.307 kb on - strand at 1883.422 kb on - strand, within DvMF_1528 at 1883.587 kb on - strand, within DvMF_1528 at 1883.594 kb on + strand, within DvMF_1528 at 1883.662 kb on + strand, within DvMF_1528 at 1883.670 kb on - strand, within DvMF_1528 at 1883.745 kb on + strand, within DvMF_1528 at 1883.833 kb on - strand, within DvMF_1528 at 1883.908 kb on + strand, within DvMF_1528 at 1883.943 kb on + strand, within DvMF_1528 at 1883.944 kb on - strand, within DvMF_1528 at 1883.960 kb on + strand, within DvMF_1528 at 1884.231 kb on + strand, within DvMF_1528 at 1884.255 kb on + strand, within DvMF_1528 at 1884.268 kb on - strand, within DvMF_1528 at 1884.273 kb on - strand, within DvMF_1528 at 1884.280 kb on + strand, within DvMF_1528 at 1884.285 kb on + strand, within DvMF_1528 at 1884.346 kb on - strand, within DvMF_1528 at 1884.536 kb on + strand, within DvMF_1528 at 1884.562 kb on - strand at 1884.634 kb on - strand at 1884.719 kb on - strand at 1884.918 kb on - strand, within DvMF_1529 at 1884.951 kb on - strand, within DvMF_1529 at 1885.028 kb on - strand, within DvMF_1529 at 1885.209 kb on - strand at 1885.211 kb on - strand at 1885.335 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 6 days starvation 37C remove 1,882,234 + DvMF_1527 0.44 -0.5 1,882,403 - DvMF_1527 0.63 -0.4 1,882,462 - DvMF_1527 0.70 -0.8 1,883,307 - -4.3 1,883,422 - DvMF_1528 0.14 -1.5 1,883,587 - DvMF_1528 0.25 +0.9 1,883,594 + DvMF_1528 0.25 -1.5 1,883,662 + DvMF_1528 0.30 -1.1 1,883,670 - DvMF_1528 0.30 -0.8 1,883,745 + DvMF_1528 0.36 -2.7 1,883,833 - DvMF_1528 0.41 -1.1 1,883,908 + DvMF_1528 0.47 -1.6 1,883,943 + DvMF_1528 0.49 -1.3 1,883,944 - DvMF_1528 0.49 -0.8 1,883,960 + DvMF_1528 0.50 -1.3 1,884,231 + DvMF_1528 0.69 -1.9 1,884,255 + DvMF_1528 0.70 -1.9 1,884,268 - DvMF_1528 0.71 -0.3 1,884,273 - DvMF_1528 0.71 -1.1 1,884,280 + DvMF_1528 0.72 -0.9 1,884,285 + DvMF_1528 0.72 -1.1 1,884,346 - DvMF_1528 0.76 -0.8 1,884,536 + DvMF_1528 0.89 -0.8 1,884,562 - -3.6 1,884,634 - -1.9 1,884,719 - -1.4 1,884,918 - DvMF_1529 0.36 -1.3 1,884,951 - DvMF_1529 0.44 -1.7 1,885,028 - DvMF_1529 0.62 -1.7 1,885,209 - -2.3 1,885,211 - -0.6 1,885,335 + -1.3
Or see this region's nucleotide sequence