Experiment: 6 days starvation 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1487 and DvMF_R0043 are separated by 636 nucleotides DvMF_R0043 and DvMF_R0044 are separated by 6 nucleotides DvMF_R0044 and DvMF_1488 are separated by 173 nucleotides DvMF_1488 and DvMF_1489 are separated by 131 nucleotides
DvMF_1487: DvMF_1487 - GCN5-related N-acetyltransferase (RefSeq), at 1,823,858 to 1,824,394
_1487
DvMF_R0043: DvMF_R0043 - tRNA-Gln (RefSeq), at 1,825,031 to 1,825,105
_R0043
DvMF_R0044: DvMF_R0044 - tRNA-Glu (RefSeq), at 1,825,112 to 1,825,188
_R0044
DvMF_1488: DvMF_1488 - protein of unknown function DUF1063 (RefSeq), at 1,825,362 to 1,826,702
_1488
DvMF_1489: DvMF_1489 - Lysine exporter protein (LYSE/YGGA) (RefSeq), at 1,826,834 to 1,827,526
_1489
Position (kb)
1825
1826
1827 Strain fitness (log2 ratio)
-1
0
1 at 1824.381 kb on + strand at 1824.599 kb on - strand at 1824.778 kb on - strand at 1824.892 kb on - strand at 1825.705 kb on + strand, within DvMF_1488 at 1825.723 kb on + strand, within DvMF_1488 at 1825.896 kb on + strand, within DvMF_1488 at 1826.181 kb on - strand, within DvMF_1488 at 1826.187 kb on + strand, within DvMF_1488 at 1826.195 kb on - strand, within DvMF_1488 at 1826.285 kb on - strand, within DvMF_1488 at 1827.313 kb on - strand, within DvMF_1489 at 1827.417 kb on + strand, within DvMF_1489
Per-strain Table
Position Strand Gene LocusTag Fraction 6 days starvation 37C remove 1,824,381 + -0.5 1,824,599 - -0.8 1,824,778 - -0.7 1,824,892 - -1.4 1,825,705 + DvMF_1488 0.26 -0.6 1,825,723 + DvMF_1488 0.27 -0.3 1,825,896 + DvMF_1488 0.40 -1.1 1,826,181 - DvMF_1488 0.61 -0.9 1,826,187 + DvMF_1488 0.62 -0.1 1,826,195 - DvMF_1488 0.62 -0.9 1,826,285 - DvMF_1488 0.69 -0.1 1,827,313 - DvMF_1489 0.69 -0.3 1,827,417 + DvMF_1489 0.84 -0.8
Or see this region's nucleotide sequence