Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1484

Experiment: 6 days starvation 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1483 and DvMF_1484 are separated by 397 nucleotidesDvMF_1484 and DvMF_1485 are separated by 303 nucleotides DvMF_1483: DvMF_1483 - inner-membrane translocator (RefSeq), at 1,817,023 to 1,817,910 _1483 DvMF_1484: DvMF_1484 - Nitrate reductase (RefSeq), at 1,818,308 to 1,820,527 _1484 DvMF_1485: DvMF_1485 - glutaminyl-tRNA synthetase (RefSeq), at 1,820,831 to 1,822,540 _1485 Position (kb) 1818 1819 1820 1821Strain fitness (log2 ratio) -2 -1 0 1at 1817.465 kb on + strand, within DvMF_1483at 1817.535 kb on + strand, within DvMF_1483at 1817.551 kb on + strand, within DvMF_1483at 1817.662 kb on - strand, within DvMF_1483at 1817.838 kb on - strandat 1817.848 kb on - strandat 1817.878 kb on - strandat 1817.953 kb on + strandat 1818.139 kb on + strandat 1818.185 kb on - strandat 1818.228 kb on - strandat 1818.511 kb on - strandat 1818.530 kb on + strand, within DvMF_1484at 1818.582 kb on - strand, within DvMF_1484at 1818.652 kb on - strand, within DvMF_1484at 1818.822 kb on - strand, within DvMF_1484at 1819.034 kb on - strand, within DvMF_1484at 1819.195 kb on - strand, within DvMF_1484at 1819.242 kb on + strand, within DvMF_1484at 1819.274 kb on + strand, within DvMF_1484at 1819.324 kb on + strand, within DvMF_1484at 1819.430 kb on + strand, within DvMF_1484at 1819.574 kb on - strand, within DvMF_1484at 1819.581 kb on + strand, within DvMF_1484at 1819.637 kb on + strand, within DvMF_1484at 1819.716 kb on + strand, within DvMF_1484at 1819.758 kb on - strand, within DvMF_1484at 1819.870 kb on - strand, within DvMF_1484at 1819.897 kb on - strand, within DvMF_1484at 1819.990 kb on + strand, within DvMF_1484at 1820.021 kb on - strand, within DvMF_1484at 1820.123 kb on - strand, within DvMF_1484at 1820.150 kb on + strand, within DvMF_1484at 1820.158 kb on - strand, within DvMF_1484at 1820.247 kb on + strand, within DvMF_1484at 1820.247 kb on + strand, within DvMF_1484at 1820.449 kb on + strandat 1820.586 kb on - strandat 1820.703 kb on - strandat 1820.747 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 6 days starvation 37C
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1,817,465 + DvMF_1483 0.50 -0.4
1,817,535 + DvMF_1483 0.58 +0.1
1,817,551 + DvMF_1483 0.59 -2.0
1,817,662 - DvMF_1483 0.72 +0.2
1,817,838 - +1.4
1,817,848 - -1.0
1,817,878 - -0.6
1,817,953 + -0.5
1,818,139 + -1.2
1,818,185 - -0.0
1,818,228 - +0.2
1,818,511 - +0.8
1,818,530 + DvMF_1484 0.10 -0.4
1,818,582 - DvMF_1484 0.12 -0.5
1,818,652 - DvMF_1484 0.15 -1.6
1,818,822 - DvMF_1484 0.23 -0.6
1,819,034 - DvMF_1484 0.33 -0.3
1,819,195 - DvMF_1484 0.40 -0.5
1,819,242 + DvMF_1484 0.42 -0.6
1,819,274 + DvMF_1484 0.44 +0.3
1,819,324 + DvMF_1484 0.46 +0.8
1,819,430 + DvMF_1484 0.51 -0.5
1,819,574 - DvMF_1484 0.57 -1.3
1,819,581 + DvMF_1484 0.57 +0.2
1,819,637 + DvMF_1484 0.60 -0.8
1,819,716 + DvMF_1484 0.63 -0.0
1,819,758 - DvMF_1484 0.65 -0.2
1,819,870 - DvMF_1484 0.70 -0.7
1,819,897 - DvMF_1484 0.72 +0.2
1,819,990 + DvMF_1484 0.76 +0.0
1,820,021 - DvMF_1484 0.77 +0.8
1,820,123 - DvMF_1484 0.82 +0.1
1,820,150 + DvMF_1484 0.83 -1.2
1,820,158 - DvMF_1484 0.83 -0.9
1,820,247 + DvMF_1484 0.87 +0.5
1,820,247 + DvMF_1484 0.87 +0.4
1,820,449 + -0.4
1,820,586 - -1.1
1,820,703 - -0.8
1,820,747 + -0.7

Or see this region's nucleotide sequence