Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1240

Experiment: 6 days starvation 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1240 and DvMF_1241 are separated by 203 nucleotides DvMF_1240: DvMF_1240 - Integral membrane protein TerC (RefSeq), at 1,529,261 to 1,530,277 _1240 DvMF_1241: DvMF_1241 - ferric uptake regulator, Fur family (RefSeq), at 1,530,481 to 1,530,993 _1241 Position (kb) 1529 1530 1531Strain fitness (log2 ratio) -2 -1 0 1at 1528.306 kb on - strandat 1528.343 kb on + strandat 1528.438 kb on - strandat 1528.633 kb on - strandat 1528.634 kb on - strandat 1528.688 kb on - strandat 1528.690 kb on + strandat 1528.755 kb on - strandat 1528.942 kb on + strandat 1528.971 kb on - strandat 1529.157 kb on + strandat 1529.219 kb on - strandat 1529.276 kb on + strandat 1529.607 kb on + strand, within DvMF_1240at 1529.726 kb on - strand, within DvMF_1240at 1529.887 kb on + strand, within DvMF_1240at 1530.021 kb on + strand, within DvMF_1240at 1530.099 kb on - strand, within DvMF_1240at 1530.203 kb on + strandat 1530.353 kb on - strandat 1530.353 kb on - strandat 1530.402 kb on + strandat 1530.421 kb on + strandat 1530.429 kb on - strandat 1530.457 kb on + strandat 1530.492 kb on + strandat 1530.675 kb on + strand, within DvMF_1241at 1530.683 kb on - strand, within DvMF_1241

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Per-strain Table

Position Strand Gene LocusTag Fraction 6 days starvation 37C
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1,528,306 - -0.2
1,528,343 + +0.2
1,528,438 - -0.3
1,528,633 - -1.1
1,528,634 - -0.8
1,528,688 - +0.2
1,528,690 + -0.1
1,528,755 - +0.8
1,528,942 + -0.2
1,528,971 - -0.8
1,529,157 + -1.1
1,529,219 - -0.7
1,529,276 + -0.2
1,529,607 + DvMF_1240 0.34 +0.7
1,529,726 - DvMF_1240 0.46 -2.7
1,529,887 + DvMF_1240 0.62 -1.1
1,530,021 + DvMF_1240 0.75 -1.3
1,530,099 - DvMF_1240 0.82 -0.4
1,530,203 + -0.5
1,530,353 - -0.7
1,530,353 - -0.7
1,530,402 + -0.8
1,530,421 + -2.1
1,530,429 - +0.5
1,530,457 + -0.8
1,530,492 + -0.6
1,530,675 + DvMF_1241 0.38 -0.0
1,530,683 - DvMF_1241 0.39 -0.9

Or see this region's nucleotide sequence