Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1232

Experiment: 6 days starvation 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1230 and DvMF_1231 are separated by 125 nucleotidesDvMF_1231 and DvMF_1232 overlap by 4 nucleotidesDvMF_1232 and DvMF_1233 overlap by 1 nucleotides DvMF_1230: DvMF_1230 - molybdenum cofactor biosynthesis protein A (RefSeq), at 1,518,320 to 1,519,405 _1230 DvMF_1231: DvMF_1231 - Molybdopterin-guanine dinucleotide biosynthesis protein A-like protein (RefSeq), at 1,519,531 to 1,520,403 _1231 DvMF_1232: DvMF_1232 - formate dehydrogenase accessory protein FdhD, putative (RefSeq), at 1,520,400 to 1,521,224 _1232 DvMF_1233: DvMF_1233 - formate dehydrogenase accessory protein (RefSeq), at 1,521,224 to 1,522,135 _1233 Position (kb) 1520 1521 1522Strain fitness (log2 ratio) -2 -1 0 1at 1519.855 kb on + strand, within DvMF_1231at 1519.999 kb on + strand, within DvMF_1231at 1520.331 kb on - strandat 1520.494 kb on - strand, within DvMF_1232at 1520.689 kb on - strand, within DvMF_1232at 1520.762 kb on - strand, within DvMF_1232at 1520.969 kb on + strand, within DvMF_1232at 1521.041 kb on - strand, within DvMF_1232at 1521.238 kb on - strandat 1521.356 kb on + strand, within DvMF_1233at 1521.512 kb on - strand, within DvMF_1233at 1521.681 kb on - strand, within DvMF_1233at 1521.751 kb on - strand, within DvMF_1233at 1521.803 kb on - strand, within DvMF_1233at 1521.846 kb on - strand, within DvMF_1233at 1522.071 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 6 days starvation 37C
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1,519,855 + DvMF_1231 0.37 -2.6
1,519,999 + DvMF_1231 0.54 -0.6
1,520,331 - -0.4
1,520,494 - DvMF_1232 0.11 -1.3
1,520,689 - DvMF_1232 0.35 -0.2
1,520,762 - DvMF_1232 0.44 -0.4
1,520,969 + DvMF_1232 0.69 +0.8
1,521,041 - DvMF_1232 0.78 -1.0
1,521,238 - -1.7
1,521,356 + DvMF_1233 0.14 -1.2
1,521,512 - DvMF_1233 0.32 -0.4
1,521,681 - DvMF_1233 0.50 -1.9
1,521,751 - DvMF_1233 0.58 -0.6
1,521,803 - DvMF_1233 0.63 -0.2
1,521,846 - DvMF_1233 0.68 +0.9
1,522,071 + -1.5

Or see this region's nucleotide sequence