Experiment: 6 days starvation 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1151 and DvMF_R0035 are separated by 218 nucleotides DvMF_R0035 and DvMF_1152 are separated by 345 nucleotides DvMF_1152 and DvMF_1153 are separated by 220 nucleotides
DvMF_1151: DvMF_1151 - transcriptional regulator, LysR family (RefSeq), at 1,411,686 to 1,412,609
_1151
DvMF_R0035: DvMF_R0035 - tRNA-Leu (RefSeq), at 1,412,828 to 1,412,914
_R0035
DvMF_1152: DvMF_1152 - Domain of unkown function DUF1786 putative pyruvate format-lyase activating enzyme (RefSeq), at 1,413,260 to 1,414,408
_1152
DvMF_1153: DvMF_1153 - Phenylacetate--CoA ligase (RefSeq), at 1,414,629 to 1,415,933
_1153
Position (kb)
1413
1414
1415 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1412.327 kb on - strand, within DvMF_1151 at 1412.405 kb on + strand, within DvMF_1151 at 1412.478 kb on + strand, within DvMF_1151 at 1412.603 kb on + strand at 1412.611 kb on - strand at 1412.767 kb on + strand at 1412.780 kb on - strand at 1413.125 kb on - strand at 1413.141 kb on - strand at 1413.496 kb on - strand, within DvMF_1152 at 1413.582 kb on - strand, within DvMF_1152 at 1413.599 kb on + strand, within DvMF_1152 at 1413.799 kb on + strand, within DvMF_1152 at 1413.901 kb on + strand, within DvMF_1152 at 1414.027 kb on + strand, within DvMF_1152 at 1414.096 kb on - strand, within DvMF_1152 at 1414.108 kb on + strand, within DvMF_1152 at 1414.249 kb on - strand, within DvMF_1152 at 1414.705 kb on + strand at 1414.875 kb on - strand, within DvMF_1153 at 1414.935 kb on - strand, within DvMF_1153 at 1415.160 kb on - strand, within DvMF_1153 at 1415.264 kb on - strand, within DvMF_1153 at 1415.293 kb on + strand, within DvMF_1153 at 1415.331 kb on - strand, within DvMF_1153 at 1415.358 kb on + strand, within DvMF_1153 at 1415.391 kb on - strand, within DvMF_1153
Per-strain Table
Position Strand Gene LocusTag Fraction 6 days starvation 37C remove 1,412,327 - DvMF_1151 0.69 -0.6 1,412,405 + DvMF_1151 0.78 -0.8 1,412,478 + DvMF_1151 0.86 -1.0 1,412,603 + -2.3 1,412,611 - -0.5 1,412,767 + -0.8 1,412,780 - -1.0 1,413,125 - -0.4 1,413,141 - +0.6 1,413,496 - DvMF_1152 0.21 -0.8 1,413,582 - DvMF_1152 0.28 -0.9 1,413,599 + DvMF_1152 0.30 -1.7 1,413,799 + DvMF_1152 0.47 -0.0 1,413,901 + DvMF_1152 0.56 -0.7 1,414,027 + DvMF_1152 0.67 -0.2 1,414,096 - DvMF_1152 0.73 -0.5 1,414,108 + DvMF_1152 0.74 -0.1 1,414,249 - DvMF_1152 0.86 -0.9 1,414,705 + -0.7 1,414,875 - DvMF_1153 0.19 -1.4 1,414,935 - DvMF_1153 0.23 -0.3 1,415,160 - DvMF_1153 0.41 -1.0 1,415,264 - DvMF_1153 0.49 -1.0 1,415,293 + DvMF_1153 0.51 -1.9 1,415,331 - DvMF_1153 0.54 -0.5 1,415,358 + DvMF_1153 0.56 -3.6 1,415,391 - DvMF_1153 0.58 -0.2
Or see this region's nucleotide sequence