Experiment: 6 days starvation 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1138 and DvMF_1139 overlap by 1 nucleotides DvMF_1139 and DvMF_1140 are separated by 164 nucleotides DvMF_1140 and DvMF_1141 are separated by 260 nucleotides
DvMF_1138: DvMF_1138 - Guanylate kinase (RefSeq), at 1,396,370 to 1,396,999
_1138
DvMF_1139: DvMF_1139 - hypothetical protein (RefSeq), at 1,396,999 to 1,397,265
_1139
DvMF_1140: DvMF_1140 - hypothetical protein (RefSeq), at 1,397,430 to 1,398,311
_1140
DvMF_1141: DvMF_1141 - PAS/PAC sensor hybrid histidine kinase (RefSeq), at 1,398,572 to 1,401,739
_1141
Position (kb)
1397
1398
1399 Strain fitness (log2 ratio)
-2
-1
0
1 at 1397.177 kb on + strand, within DvMF_1139 at 1397.654 kb on + strand, within DvMF_1140 at 1397.836 kb on + strand, within DvMF_1140 at 1398.244 kb on + strand at 1398.244 kb on + strand at 1398.250 kb on - strand at 1398.548 kb on - strand at 1398.765 kb on - strand at 1398.967 kb on + strand, within DvMF_1141 at 1399.068 kb on + strand, within DvMF_1141 at 1399.156 kb on - strand, within DvMF_1141 at 1399.156 kb on - strand, within DvMF_1141 at 1399.161 kb on - strand, within DvMF_1141 at 1399.163 kb on + strand, within DvMF_1141
Per-strain Table
Position Strand Gene LocusTag Fraction 6 days starvation 37C remove 1,397,177 + DvMF_1139 0.67 -2.3 1,397,654 + DvMF_1140 0.25 -0.1 1,397,836 + DvMF_1140 0.46 -0.0 1,398,244 + +0.3 1,398,244 + +0.0 1,398,250 - +0.2 1,398,548 - +0.8 1,398,765 - -0.1 1,398,967 + DvMF_1141 0.12 -0.9 1,399,068 + DvMF_1141 0.16 +0.5 1,399,156 - DvMF_1141 0.18 -0.3 1,399,156 - DvMF_1141 0.18 -0.3 1,399,161 - DvMF_1141 0.19 -0.4 1,399,163 + DvMF_1141 0.19 -0.1
Or see this region's nucleotide sequence