Experiment: 6 days starvation 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1122 and DvMF_1123 are separated by 108 nucleotides DvMF_1123 and DvMF_1124 are separated by 150 nucleotides DvMF_1124 and DvMF_1125 overlap by 1 nucleotides
DvMF_1122: DvMF_1122 - Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq), at 1,378,795 to 1,380,240
_1122
DvMF_1123: DvMF_1123 - queuosine biosynthesis protein QueD (RefSeq), at 1,380,349 to 1,380,717
_1123
DvMF_1124: DvMF_1124 - radical SAM domain protein (RefSeq), at 1,380,868 to 1,381,542
_1124
DvMF_1125: DvMF_1125 - exsB protein (RefSeq), at 1,381,542 to 1,382,261
_1125
Position (kb)
1380
1381
1382 Strain fitness (log2 ratio)
-2
-1
0
1 at 1379.883 kb on - strand, within DvMF_1122 at 1380.085 kb on - strand, within DvMF_1122 at 1380.279 kb on - strand at 1380.285 kb on - strand at 1380.825 kb on - strand at 1380.856 kb on + strand at 1380.921 kb on - strand at 1381.171 kb on + strand, within DvMF_1124 at 1381.171 kb on + strand, within DvMF_1124 at 1381.280 kb on + strand, within DvMF_1124 at 1381.637 kb on + strand, within DvMF_1125 at 1381.702 kb on - strand, within DvMF_1125 at 1382.199 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 6 days starvation 37C remove 1,379,883 - DvMF_1122 0.75 -0.7 1,380,085 - DvMF_1122 0.89 -1.0 1,380,279 - -2.6 1,380,285 - -0.6 1,380,825 - -1.1 1,380,856 + -0.3 1,380,921 - -0.9 1,381,171 + DvMF_1124 0.45 -1.5 1,381,171 + DvMF_1124 0.45 -1.4 1,381,280 + DvMF_1124 0.61 -0.4 1,381,637 + DvMF_1125 0.13 -1.0 1,381,702 - DvMF_1125 0.22 +0.4 1,382,199 - -1.0
Or see this region's nucleotide sequence