Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0892

Experiment: 6 days starvation 37C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_0890 and DvMF_0891 overlap by 13 nucleotidesDvMF_0891 and DvMF_0892 are separated by 540 nucleotidesDvMF_0892 and DvMF_0893 are separated by 176 nucleotides DvMF_0890: DvMF_0890 - ribonuclease P protein component (RefSeq), at 1,074,423 to 1,074,965 _0890 DvMF_0891: DvMF_0891 - ribosomal protein L34 (RefSeq), at 1,074,953 to 1,075,090 _0891 DvMF_0892: DvMF_0892 - hypothetical protein (RefSeq), at 1,075,631 to 1,076,659 _0892 DvMF_0893: DvMF_0893 - hypothetical protein (RefSeq), at 1,076,836 to 1,077,468 _0893 Position (kb) 1075 1076 1077Strain fitness (log2 ratio) -1 0 1at 1075.453 kb on + strandat 1075.643 kb on + strandat 1075.920 kb on + strand, within DvMF_0892at 1075.923 kb on - strand, within DvMF_0892at 1075.923 kb on - strand, within DvMF_0892at 1075.928 kb on - strand, within DvMF_0892at 1075.953 kb on - strand, within DvMF_0892at 1076.451 kb on - strand, within DvMF_0892at 1076.529 kb on - strand, within DvMF_0892at 1076.543 kb on + strand, within DvMF_0892at 1076.660 kb on + strandat 1076.683 kb on - strandat 1076.706 kb on - strandat 1076.706 kb on - strandat 1076.934 kb on + strand, within DvMF_0893at 1076.934 kb on + strand, within DvMF_0893at 1076.960 kb on + strand, within DvMF_0893at 1076.982 kb on - strand, within DvMF_0893at 1076.992 kb on - strand, within DvMF_0893at 1077.168 kb on + strand, within DvMF_0893at 1077.247 kb on - strand, within DvMF_0893at 1077.487 kb on + strandat 1077.601 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 6 days starvation 37C
remove
1,075,453 + +0.1
1,075,643 + -0.2
1,075,920 + DvMF_0892 0.28 -1.0
1,075,923 - DvMF_0892 0.28 -0.9
1,075,923 - DvMF_0892 0.28 -0.3
1,075,928 - DvMF_0892 0.29 -0.2
1,075,953 - DvMF_0892 0.31 +0.2
1,076,451 - DvMF_0892 0.80 -0.1
1,076,529 - DvMF_0892 0.87 -1.2
1,076,543 + DvMF_0892 0.89 +0.4
1,076,660 + +0.2
1,076,683 - -0.3
1,076,706 - -0.1
1,076,706 - -0.2
1,076,934 + DvMF_0893 0.15 -0.0
1,076,934 + DvMF_0893 0.15 -0.8
1,076,960 + DvMF_0893 0.20 +0.5
1,076,982 - DvMF_0893 0.23 -0.1
1,076,992 - DvMF_0893 0.25 -0.6
1,077,168 + DvMF_0893 0.52 -0.4
1,077,247 - DvMF_0893 0.65 -0.0
1,077,487 + +0.3
1,077,601 + -0.4

Or see this region's nucleotide sequence