Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0623

Experiment: 6 days starvation 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0622 and DvMF_0623 are separated by 751 nucleotidesDvMF_0623 and DvMF_0624 are separated by 18 nucleotides DvMF_0622: DvMF_0622 - transcriptional regulator, BadM/Rrf2 family (RefSeq), at 744,174 to 744,716 _0622 DvMF_0623: DvMF_0623 - transcriptional regulator, BadM/Rrf2 family (RefSeq), at 745,468 to 746,037 _0623 DvMF_0624: DvMF_0624 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase (RefSeq), at 746,056 to 747,297 _0624 Position (kb) 745 746 747Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 744.718 kb on + strandat 744.726 kb on - strandat 745.038 kb on + strandat 745.184 kb on - strandat 745.519 kb on + strandat 745.519 kb on + strandat 745.522 kb on - strandat 745.529 kb on + strand, within DvMF_0623at 745.962 kb on - strand, within DvMF_0623at 746.023 kb on + strandat 746.031 kb on - strandat 746.204 kb on - strand, within DvMF_0624at 746.204 kb on - strand, within DvMF_0624at 746.227 kb on - strand, within DvMF_0624at 746.636 kb on - strand, within DvMF_0624

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Per-strain Table

Position Strand Gene LocusTag Fraction 6 days starvation 37C
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744,718 + +1.9
744,726 - +0.9
745,038 + -0.5
745,184 - -1.1
745,519 + -0.3
745,519 + -0.0
745,522 - +0.3
745,529 + DvMF_0623 0.11 -2.9
745,962 - DvMF_0623 0.87 -1.8
746,023 + -0.5
746,031 - -1.2
746,204 - DvMF_0624 0.12 -0.8
746,204 - DvMF_0624 0.12 -0.9
746,227 - DvMF_0624 0.14 -0.9
746,636 - DvMF_0624 0.47 +0.7

Or see this region's nucleotide sequence