Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0321

Experiment: 6 days starvation 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0320 and DvMF_0321 are separated by 525 nucleotidesDvMF_0321 and DvMF_0322 are separated by 279 nucleotidesDvMF_0322 and DvMF_0323 overlap by 4 nucleotides DvMF_0320: DvMF_0320 - Formate dehydrogenase (RefSeq), at 371,427 to 373,529 _0320 DvMF_0321: DvMF_0321 - iron-containing alcohol dehydrogenase (RefSeq), at 374,055 to 375,236 _0321 DvMF_0322: DvMF_0322 - heterodisulfide reductase, C subunit (RefSeq), at 375,516 to 376,076 _0322 DvMF_0323: DvMF_0323 - CoB--CoM heterodisulfide reductase (RefSeq), at 376,073 to 377,053 _0323 Position (kb) 374 375 376Strain fitness (log2 ratio) -2 -1 0 1at 373.154 kb on + strand, within DvMF_0320at 373.162 kb on - strand, within DvMF_0320at 373.184 kb on + strand, within DvMF_0320at 373.187 kb on - strand, within DvMF_0320at 373.238 kb on - strand, within DvMF_0320at 373.398 kb on + strandat 373.413 kb on - strandat 373.413 kb on - strandat 373.444 kb on + strandat 373.477 kb on - strandat 373.519 kb on - strandat 373.519 kb on - strandat 373.535 kb on + strandat 373.666 kb on - strandat 373.781 kb on - strandat 373.852 kb on - strandat 373.930 kb on + strandat 373.990 kb on - strandat 373.990 kb on - strandat 373.990 kb on - strandat 374.038 kb on - strandat 374.072 kb on + strandat 374.072 kb on + strandat 374.072 kb on + strandat 374.095 kb on + strandat 374.103 kb on - strandat 374.158 kb on + strandat 374.158 kb on + strandat 374.158 kb on + strandat 374.270 kb on - strand, within DvMF_0321at 374.341 kb on + strand, within DvMF_0321at 374.657 kb on - strand, within DvMF_0321at 374.657 kb on - strand, within DvMF_0321at 374.708 kb on - strand, within DvMF_0321at 374.720 kb on + strand, within DvMF_0321at 374.810 kb on + strand, within DvMF_0321at 374.855 kb on + strand, within DvMF_0321at 375.058 kb on + strand, within DvMF_0321at 375.580 kb on + strand, within DvMF_0322at 375.713 kb on - strand, within DvMF_0322

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Per-strain Table

Position Strand Gene LocusTag Fraction 6 days starvation 37C
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373,154 + DvMF_0320 0.82 +1.4
373,162 - DvMF_0320 0.83 -0.3
373,184 + DvMF_0320 0.84 -2.2
373,187 - DvMF_0320 0.84 -0.4
373,238 - DvMF_0320 0.86 -1.6
373,398 + -2.3
373,413 - -0.0
373,413 - -0.5
373,444 + -0.5
373,477 - -1.2
373,519 - -1.5
373,519 - -1.2
373,535 + -1.6
373,666 - -1.0
373,781 - -1.2
373,852 - -0.6
373,930 + -0.6
373,990 - -1.3
373,990 - -0.2
373,990 - -0.5
374,038 - -2.2
374,072 + -1.4
374,072 + -0.8
374,072 + -1.3
374,095 + -1.8
374,103 - -1.6
374,158 + -0.4
374,158 + -0.8
374,158 + -0.6
374,270 - DvMF_0321 0.18 -2.3
374,341 + DvMF_0321 0.24 -1.0
374,657 - DvMF_0321 0.51 -0.5
374,657 - DvMF_0321 0.51 -2.3
374,708 - DvMF_0321 0.55 -0.6
374,720 + DvMF_0321 0.56 -1.0
374,810 + DvMF_0321 0.64 -1.2
374,855 + DvMF_0321 0.68 -0.4
375,058 + DvMF_0321 0.85 -0.8
375,580 + DvMF_0322 0.11 +0.4
375,713 - DvMF_0322 0.35 +0.6

Or see this region's nucleotide sequence