Experiment: 6 days starvation 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_R0014 and DvMF_0258 are separated by 66 nucleotides DvMF_0258 and DvMF_0259 are separated by 18 nucleotides DvMF_0259 and DvMF_R0015 are separated by 190 nucleotides DvMF_R0015 and DvMF_0260 are separated by 120 nucleotides
DvMF_R0014: DvMF_R0014 - RNA component of RNaseP (RefSeq), at 295,221 to 295,528
_R0014
DvMF_0258: DvMF_0258 - protein of unknown function DUF164 (RefSeq), at 295,595 to 296,344
_0258
DvMF_0259: DvMF_0259 - protein of unknown function DUF34 (RefSeq), at 296,363 to 297,397
_0259
DvMF_R0015: DvMF_R0015 - tRNA-Met (RefSeq), at 297,588 to 297,663
_R0015
DvMF_0260: DvMF_0260 - Thioredoxin-disulfide reductase (RefSeq), at 297,784 to 298,740
_0260
Position (kb) 296
297
298 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 296.576 kb on - strand, within DvMF_0259 at 296.706 kb on - strand, within DvMF_0259 at 296.713 kb on + strand, within DvMF_0259 at 297.092 kb on - strand, within DvMF_0259 at 297.118 kb on + strand, within DvMF_0259 at 297.441 kb on + strand at 297.485 kb on - strand at 297.832 kb on + strand at 297.837 kb on + strand at 297.840 kb on - strand at 297.965 kb on + strand, within DvMF_0260 at 298.159 kb on + strand, within DvMF_0260 at 298.159 kb on + strand, within DvMF_0260 at 298.178 kb on - strand, within DvMF_0260 at 298.242 kb on + strand, within DvMF_0260
Per-strain Table
Position Strand Gene LocusTag Fraction 6 days starvation 37C remove 296,576 - DvMF_0259 0.21 -1.2 296,706 - DvMF_0259 0.33 -3.7 296,713 + DvMF_0259 0.34 -1.4 297,092 - DvMF_0259 0.70 -3.2 297,118 + DvMF_0259 0.73 -1.5 297,441 + -1.2 297,485 - -0.1 297,832 + -1.4 297,837 + -0.6 297,840 - -0.7 297,965 + DvMF_0260 0.19 -1.1 298,159 + DvMF_0260 0.39 -1.3 298,159 + DvMF_0260 0.39 -3.2 298,178 - DvMF_0260 0.41 -2.5 298,242 + DvMF_0260 0.48 -0.9
Or see this region's nucleotide sequence