Experiment: 6 days starvation 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0116 and DvMF_0117 are separated by 243 nucleotides DvMF_0117 and DvMF_0118 overlap by 1 nucleotides DvMF_0118 and DvMF_0119 are separated by 6 nucleotides
DvMF_0116: DvMF_0116 - ferric uptake regulator, Fur family (RefSeq), at 126,981 to 127,409
_0116
DvMF_0117: DvMF_0117 - ABC-3 protein (RefSeq), at 127,653 to 128,483
_0117
DvMF_0118: DvMF_0118 - ABC transporter related (RefSeq), at 128,483 to 129,409
_0118
DvMF_0119: DvMF_0119 - periplasmic solute binding protein (RefSeq), at 129,416 to 130,450
_0119
Position (kb)
127
128
129 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 126.999 kb on + strand at 127.234 kb on - strand, within DvMF_0116 at 127.252 kb on - strand, within DvMF_0116 at 127.287 kb on - strand, within DvMF_0116 at 127.311 kb on + strand, within DvMF_0116 at 127.314 kb on - strand, within DvMF_0116 at 127.457 kb on + strand at 127.488 kb on - strand at 127.597 kb on + strand at 127.719 kb on - strand at 127.719 kb on - strand at 127.778 kb on + strand, within DvMF_0117 at 128.111 kb on + strand, within DvMF_0117 at 128.303 kb on - strand, within DvMF_0117 at 128.310 kb on + strand, within DvMF_0117 at 128.390 kb on + strand, within DvMF_0117 at 128.702 kb on + strand, within DvMF_0118 at 128.712 kb on - strand, within DvMF_0118 at 128.734 kb on - strand, within DvMF_0118 at 128.784 kb on - strand, within DvMF_0118 at 128.784 kb on - strand, within DvMF_0118 at 128.802 kb on + strand, within DvMF_0118 at 129.442 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 6 days starvation 37C remove 126,999 + -0.1 127,234 - DvMF_0116 0.59 -0.7 127,252 - DvMF_0116 0.63 -0.7 127,287 - DvMF_0116 0.71 -1.9 127,311 + DvMF_0116 0.77 +0.5 127,314 - DvMF_0116 0.78 -0.8 127,457 + -0.6 127,488 - -1.6 127,597 + -0.8 127,719 - -1.0 127,719 - +0.4 127,778 + DvMF_0117 0.15 -0.5 128,111 + DvMF_0117 0.55 -0.3 128,303 - DvMF_0117 0.78 +1.3 128,310 + DvMF_0117 0.79 +3.2 128,390 + DvMF_0117 0.89 -0.3 128,702 + DvMF_0118 0.24 +1.1 128,712 - DvMF_0118 0.25 +0.3 128,734 - DvMF_0118 0.27 -0.7 128,784 - DvMF_0118 0.32 -0.3 128,784 - DvMF_0118 0.32 +1.3 128,802 + DvMF_0118 0.34 -0.4 129,442 - -0.1
Or see this region's nucleotide sequence