Experiment: 6 days starvation 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0112 and DvMF_0113 are separated by 397 nucleotides DvMF_0113 and DvMF_0114 are separated by 22 nucleotides DvMF_0114 and DvMF_0115 are separated by 17 nucleotides
DvMF_0112: DvMF_0112 - ATP-dependent protease La (RefSeq), at 121,895 to 124,357
_0112
DvMF_0113: DvMF_0113 - hypothetical protein (RefSeq), at 124,755 to 125,330
_0113
DvMF_0114: DvMF_0114 - hypothetical protein (RefSeq), at 125,353 to 125,619
_0114
DvMF_0115: DvMF_0115 - hypothetical protein (RefSeq), at 125,637 to 126,578
_0115
Position (kb) 124
125
126 Strain fitness (log2 ratio) -2
-1
0
1 at 123.831 kb on - strand, within DvMF_0112 at 124.375 kb on - strand at 124.789 kb on + strand at 124.854 kb on + strand, within DvMF_0113 at 124.869 kb on - strand, within DvMF_0113 at 125.031 kb on + strand, within DvMF_0113 at 125.032 kb on + strand, within DvMF_0113 at 125.035 kb on - strand, within DvMF_0113 at 125.209 kb on - strand, within DvMF_0113 at 125.270 kb on - strand, within DvMF_0113 at 125.398 kb on + strand, within DvMF_0114 at 125.485 kb on - strand, within DvMF_0114 at 125.719 kb on - strand at 125.762 kb on + strand, within DvMF_0115 at 125.875 kb on + strand, within DvMF_0115 at 126.089 kb on - strand, within DvMF_0115
Per-strain Table
Position Strand Gene LocusTag Fraction 6 days starvation 37C remove 123,831 - DvMF_0112 0.79 -1.4 124,375 - -2.5 124,789 + -0.0 124,854 + DvMF_0113 0.17 +1.3 124,869 - DvMF_0113 0.20 -0.6 125,031 + DvMF_0113 0.48 -0.4 125,032 + DvMF_0113 0.48 +0.2 125,035 - DvMF_0113 0.49 -0.6 125,209 - DvMF_0113 0.79 +0.2 125,270 - DvMF_0113 0.89 -0.4 125,398 + DvMF_0114 0.17 -0.9 125,485 - DvMF_0114 0.49 -1.4 125,719 - -0.2 125,762 + DvMF_0115 0.13 -0.6 125,875 + DvMF_0115 0.25 -0.4 126,089 - DvMF_0115 0.48 -0.1
Or see this region's nucleotide sequence