Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0106

Experiment: 6 days starvation 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0105 and rplQ overlap by 11 nucleotidesrplQ and DvMF_0107 are separated by 195 nucleotides DvMF_0105: DvMF_0105 - DNA-directed RNA polymerase subunit alpha (RefSeq), at 113,673 to 114,716 _0105 DvMF_0106: rplQ - 50S ribosomal protein L17 (RefSeq), at 114,706 to 115,107 rplQ DvMF_0107: DvMF_0107 - selenide, water dikinase (RefSeq), at 115,303 to 116,355 _0107 Position (kb) 114 115 116Strain fitness (log2 ratio) -3 -2 -1 0 1at 115.291 kb on + strandat 115.299 kb on - strandat 115.611 kb on - strand, within DvMF_0107at 115.622 kb on - strand, within DvMF_0107at 115.752 kb on + strand, within DvMF_0107

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Per-strain Table

Position Strand Gene LocusTag Fraction 6 days starvation 37C
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115,291 + +0.1
115,299 - -0.5
115,611 - DvMF_0107 0.29 -0.9
115,622 - DvMF_0107 0.30 -0.9
115,752 + DvMF_0107 0.43 -2.8

Or see this region's nucleotide sequence