Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1643

Experiment: Lactate-Sulfate (60-30 mM) minimal (MoLS4)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1641 and DORF12461 are separated by 20 nucleotidesDORF12461 and DORF12465 are separated by 39 nucleotidesDORF12465 and DORF12467 overlap by 14 nucleotidesDORF12467 and DORF12469 are separated by 3 nucleotidesDORF12469 and DVU1643 are separated by 53 nucleotidesDVU1643 and tRNA-Pro are separated by 119 nucleotidestRNA-Pro and DVU1644 are separated by 85 nucleotides DVU1641: DVU1641 - conserved hypothetical protein (TIGR), at 1,721,579 to 1,721,902 DVU1641 DORF12461: DORF12461 - SEED: HigA protein (antitoxin to HigB), at 1,721,923 to 1,722,225 DORF12461 DORF12465: DORF12465 - SEED: HigB toxin protein, at 1,722,265 to 1,722,582 DORF12465 DORF12467: DORF12467 - SEED: protein of unknown function DUF497, at 1,722,569 to 1,722,736 DORF12467 DORF12469: DORF12469 - no description, at 1,722,740 to 1,722,838 DORF12469 DVU1643: DVU1643 - conserved hypothetical protein, degenerate (TIGR), at 1,722,892 to 1,723,426 DVU1643 DVU_tRNA-Pro-1: tRNA-Pro - tRNA with anticodon TGG for Pro (VIMSS-AUTO), at 1,723,546 to 1,723,622 tRNA-Pro DVU1644: DVU1644 - permease, putative (TIGR), at 1,723,708 to 1,724,823 DVU1644 Position (kb) 1722 1723 1724Strain fitness (log2 ratio) -2 -1 0 1 2at 1721.906 kb on - strandat 1721.914 kb on + strandat 1721.923 kb on - strandat 1721.923 kb on - strandat 1721.981 kb on + strand, within DORF12461at 1721.981 kb on + strand, within DORF12461at 1722.186 kb on - strand, within DORF12461at 1722.205 kb on - strandat 1722.249 kb on - strandat 1722.250 kb on + strandat 1722.327 kb on - strand, within DORF12465at 1722.438 kb on + strand, within DORF12465at 1722.441 kb on - strand, within DORF12465at 1722.483 kb on - strand, within DORF12465at 1722.676 kb on - strand, within DORF12467at 1722.698 kb on + strand, within DORF12467at 1722.898 kb on + strandat 1722.907 kb on - strandat 1722.915 kb on - strandat 1723.062 kb on + strand, within DVU1643at 1723.113 kb on + strand, within DVU1643at 1723.122 kb on - strand, within DVU1643at 1723.156 kb on - strand, within DVU1643at 1723.195 kb on - strand, within DVU1643at 1723.258 kb on + strand, within DVU1643at 1723.258 kb on + strand, within DVU1643at 1723.266 kb on - strand, within DVU1643at 1723.312 kb on + strand, within DVU1643at 1723.325 kb on - strand, within DVU1643at 1723.333 kb on - strand, within DVU1643at 1723.363 kb on + strand, within DVU1643at 1723.371 kb on - strand, within DVU1643at 1723.371 kb on - strand, within DVU1643at 1723.463 kb on + strandat 1723.773 kb on - strandat 1723.785 kb on + strandat 1723.837 kb on + strand, within DVU1644at 1723.889 kb on + strand, within DVU1644at 1723.889 kb on + strand, within DVU1644at 1723.949 kb on - strand, within DVU1644at 1723.989 kb on - strand, within DVU1644at 1724.220 kb on - strand, within DVU1644at 1724.351 kb on + strand, within DVU1644at 1724.356 kb on + strand, within DVU1644at 1724.399 kb on + strand, within DVU1644at 1724.399 kb on - strand, within DVU1644

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactate-Sulfate (60-30 mM) minimal (MoLS4)
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1,721,906 - -1.3
1,721,914 + -1.5
1,721,923 - -1.0
1,721,923 - -0.1
1,721,981 + DORF12461 0.19 -1.6
1,721,981 + DORF12461 0.19 +0.0
1,722,186 - DORF12461 0.87 -0.1
1,722,205 - -0.9
1,722,249 - +0.1
1,722,250 + -0.1
1,722,327 - DORF12465 0.19 -1.0
1,722,438 + DORF12465 0.54 -0.7
1,722,441 - DORF12465 0.55 -1.4
1,722,483 - DORF12465 0.69 -0.3
1,722,676 - DORF12467 0.64 +1.0
1,722,698 + DORF12467 0.77 +0.2
1,722,898 + +0.2
1,722,907 - +1.9
1,722,915 - -0.1
1,723,062 + DVU1643 0.32 -0.5
1,723,113 + DVU1643 0.41 -0.3
1,723,122 - DVU1643 0.43 -0.3
1,723,156 - DVU1643 0.49 -0.9
1,723,195 - DVU1643 0.57 +0.0
1,723,258 + DVU1643 0.68 -0.3
1,723,258 + DVU1643 0.68 -0.9
1,723,266 - DVU1643 0.70 -1.8
1,723,312 + DVU1643 0.79 +0.5
1,723,325 - DVU1643 0.81 +0.3
1,723,333 - DVU1643 0.82 -0.1
1,723,363 + DVU1643 0.88 -2.0
1,723,371 - DVU1643 0.90 +0.2
1,723,371 - DVU1643 0.90 -0.5
1,723,463 + +0.4
1,723,773 - +0.1
1,723,785 + -0.8
1,723,837 + DVU1644 0.12 -0.3
1,723,889 + DVU1644 0.16 +0.0
1,723,889 + DVU1644 0.16 +0.4
1,723,949 - DVU1644 0.22 +0.2
1,723,989 - DVU1644 0.25 -0.2
1,724,220 - DVU1644 0.46 +0.2
1,724,351 + DVU1644 0.58 +0.3
1,724,356 + DVU1644 0.58 -0.6
1,724,399 + DVU1644 0.62 -0.1
1,724,399 - DVU1644 0.62 -1.6

Or see this region's nucleotide sequence