Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2982

Experiment: m.b. copper (II) chloride 0.64 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2981 and Dshi_2982 are separated by 74 nucleotidesDshi_2982 and Dshi_2983 are separated by 63 nucleotides Dshi_2981: Dshi_2981 - Sulfite oxidase (RefSeq), at 3,147,482 to 3,148,744 _2981 Dshi_2982: Dshi_2982 - hypothetical protein (RefSeq), at 3,148,819 to 3,149,169 _2982 Dshi_2983: Dshi_2983 - Alcohol dehydrogenase zinc-binding domain protein (RefSeq), at 3,149,233 to 3,150,231 _2983 Position (kb) 3148 3149 3150Strain fitness (log2 ratio) -2 -1 0 1at 3147.828 kb on - strand, within Dshi_2981at 3147.899 kb on + strand, within Dshi_2981at 3147.907 kb on - strand, within Dshi_2981at 3147.914 kb on - strand, within Dshi_2981at 3148.054 kb on + strand, within Dshi_2981at 3148.063 kb on + strand, within Dshi_2981at 3148.184 kb on - strand, within Dshi_2981at 3148.327 kb on + strand, within Dshi_2981at 3148.327 kb on + strand, within Dshi_2981at 3148.327 kb on + strand, within Dshi_2981at 3148.327 kb on + strand, within Dshi_2981at 3148.335 kb on - strand, within Dshi_2981at 3148.396 kb on - strand, within Dshi_2981at 3148.397 kb on + strand, within Dshi_2981at 3148.448 kb on - strand, within Dshi_2981at 3148.473 kb on + strand, within Dshi_2981at 3148.581 kb on + strand, within Dshi_2981at 3148.608 kb on - strand, within Dshi_2981at 3148.713 kb on - strandat 3148.722 kb on + strandat 3148.751 kb on - strandat 3148.751 kb on - strandat 3148.772 kb on - strandat 3148.782 kb on - strandat 3148.882 kb on + strand, within Dshi_2982at 3148.882 kb on + strand, within Dshi_2982at 3149.019 kb on + strand, within Dshi_2982at 3149.147 kb on + strandat 3149.158 kb on + strandat 3149.171 kb on - strandat 3149.218 kb on + strandat 3149.226 kb on - strandat 3149.310 kb on - strandat 3149.361 kb on - strand, within Dshi_2983at 3149.427 kb on + strand, within Dshi_2983at 3149.466 kb on + strand, within Dshi_2983at 3149.535 kb on - strand, within Dshi_2983at 3149.554 kb on + strand, within Dshi_2983at 3149.584 kb on + strand, within Dshi_2983at 3149.652 kb on - strand, within Dshi_2983at 3149.659 kb on + strand, within Dshi_2983at 3149.798 kb on - strand, within Dshi_2983at 3149.928 kb on - strand, within Dshi_2983at 3149.934 kb on + strand, within Dshi_2983at 3149.934 kb on + strand, within Dshi_2983at 3149.942 kb on - strand, within Dshi_2983at 3150.010 kb on - strand, within Dshi_2983at 3150.079 kb on - strand, within Dshi_2983at 3150.118 kb on - strand, within Dshi_2983

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.64 mM
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3,147,828 - Dshi_2981 0.27 -1.1
3,147,899 + Dshi_2981 0.33 -0.2
3,147,907 - Dshi_2981 0.34 -0.3
3,147,914 - Dshi_2981 0.34 +0.7
3,148,054 + Dshi_2981 0.45 +0.5
3,148,063 + Dshi_2981 0.46 +1.4
3,148,184 - Dshi_2981 0.56 -2.3
3,148,327 + Dshi_2981 0.67 +0.7
3,148,327 + Dshi_2981 0.67 -0.5
3,148,327 + Dshi_2981 0.67 +0.3
3,148,327 + Dshi_2981 0.67 -0.4
3,148,335 - Dshi_2981 0.68 +0.6
3,148,396 - Dshi_2981 0.72 -0.1
3,148,397 + Dshi_2981 0.72 +0.6
3,148,448 - Dshi_2981 0.76 +0.1
3,148,473 + Dshi_2981 0.78 -2.0
3,148,581 + Dshi_2981 0.87 -0.3
3,148,608 - Dshi_2981 0.89 +0.3
3,148,713 - -0.3
3,148,722 + -0.6
3,148,751 - +1.0
3,148,751 - -0.3
3,148,772 - +0.6
3,148,782 - +1.1
3,148,882 + Dshi_2982 0.18 +1.0
3,148,882 + Dshi_2982 0.18 +1.1
3,149,019 + Dshi_2982 0.57 +0.7
3,149,147 + +1.0
3,149,158 + -0.9
3,149,171 - +0.6
3,149,218 + -0.5
3,149,226 - -1.9
3,149,310 - -2.1
3,149,361 - Dshi_2983 0.13 +0.1
3,149,427 + Dshi_2983 0.19 -1.5
3,149,466 + Dshi_2983 0.23 +0.0
3,149,535 - Dshi_2983 0.30 -0.3
3,149,554 + Dshi_2983 0.32 +0.1
3,149,584 + Dshi_2983 0.35 +0.4
3,149,652 - Dshi_2983 0.42 +0.6
3,149,659 + Dshi_2983 0.43 +1.0
3,149,798 - Dshi_2983 0.57 -0.0
3,149,928 - Dshi_2983 0.70 +0.3
3,149,934 + Dshi_2983 0.70 -0.4
3,149,934 + Dshi_2983 0.70 +0.1
3,149,942 - Dshi_2983 0.71 -0.1
3,150,010 - Dshi_2983 0.78 -0.1
3,150,079 - Dshi_2983 0.85 -0.1
3,150,118 - Dshi_2983 0.89 +0.5

Or see this region's nucleotide sequence