Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2427

Experiment: m.b. copper (II) chloride 0.64 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2426 and Dshi_2427 are separated by 185 nucleotidesDshi_2427 and Dshi_2428 are separated by 5 nucleotidesDshi_2428 and Dshi_2429 are separated by 323 nucleotides Dshi_2426: Dshi_2426 - peptidase S8 and S53 subtilisin kexin sedolisin (RefSeq), at 2,567,452 to 2,568,609 _2426 Dshi_2427: Dshi_2427 - hypothetical protein (RefSeq), at 2,568,795 to 2,569,361 _2427 Dshi_2428: Dshi_2428 - RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq), at 2,569,367 to 2,569,903 _2428 Dshi_2429: Dshi_2429 - Rhamnulokinase RhaK in alpha-proteobacteria (EC 2.7.1.5) (from data), at 2,570,227 to 2,571,612 _2429 Position (kb) 2568 2569 2570Strain fitness (log2 ratio) -2 -1 0 1at 2567.899 kb on - strand, within Dshi_2426at 2568.006 kb on + strand, within Dshi_2426at 2568.014 kb on - strand, within Dshi_2426at 2568.123 kb on + strand, within Dshi_2426at 2568.136 kb on - strand, within Dshi_2426at 2568.207 kb on - strand, within Dshi_2426at 2568.224 kb on + strand, within Dshi_2426at 2568.277 kb on + strand, within Dshi_2426at 2568.390 kb on + strand, within Dshi_2426at 2568.507 kb on - strandat 2568.542 kb on - strandat 2568.552 kb on - strandat 2568.552 kb on - strandat 2568.669 kb on + strandat 2568.669 kb on + strandat 2568.669 kb on + strandat 2568.677 kb on - strandat 2568.692 kb on + strandat 2568.692 kb on + strandat 2568.692 kb on + strandat 2568.692 kb on - strandat 2568.700 kb on - strandat 2568.726 kb on + strandat 2568.726 kb on + strandat 2568.759 kb on + strandat 2568.881 kb on + strand, within Dshi_2427at 2568.968 kb on + strand, within Dshi_2427at 2568.981 kb on - strand, within Dshi_2427at 2568.987 kb on + strand, within Dshi_2427at 2569.081 kb on - strand, within Dshi_2427at 2569.249 kb on + strand, within Dshi_2427at 2569.280 kb on - strand, within Dshi_2427at 2569.394 kb on + strandat 2569.520 kb on - strand, within Dshi_2428at 2569.522 kb on + strand, within Dshi_2428at 2569.635 kb on - strand, within Dshi_2428at 2569.655 kb on - strand, within Dshi_2428at 2569.765 kb on - strand, within Dshi_2428at 2569.767 kb on - strand, within Dshi_2428at 2569.798 kb on + strand, within Dshi_2428at 2569.821 kb on + strand, within Dshi_2428at 2569.831 kb on + strand, within Dshi_2428at 2569.896 kb on - strandat 2569.949 kb on + strandat 2570.074 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.64 mM
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2,567,899 - Dshi_2426 0.39 +0.6
2,568,006 + Dshi_2426 0.48 +0.9
2,568,014 - Dshi_2426 0.49 +0.6
2,568,123 + Dshi_2426 0.58 +0.2
2,568,136 - Dshi_2426 0.59 +0.2
2,568,207 - Dshi_2426 0.65 +0.9
2,568,224 + Dshi_2426 0.67 +0.4
2,568,277 + Dshi_2426 0.71 +0.3
2,568,390 + Dshi_2426 0.81 -1.9
2,568,507 - -1.2
2,568,542 - +0.4
2,568,552 - +0.4
2,568,552 - +1.1
2,568,669 + +0.1
2,568,669 + +0.1
2,568,669 + -0.8
2,568,677 - +0.7
2,568,692 + +0.5
2,568,692 + -0.1
2,568,692 + -0.0
2,568,692 - -0.3
2,568,700 - -0.4
2,568,726 + -1.0
2,568,726 + +0.0
2,568,759 + +0.6
2,568,881 + Dshi_2427 0.15 -1.7
2,568,968 + Dshi_2427 0.31 -0.3
2,568,981 - Dshi_2427 0.33 +0.2
2,568,987 + Dshi_2427 0.34 -0.2
2,569,081 - Dshi_2427 0.50 -0.8
2,569,249 + Dshi_2427 0.80 -1.1
2,569,280 - Dshi_2427 0.86 -0.4
2,569,394 + -0.1
2,569,520 - Dshi_2428 0.28 -0.3
2,569,522 + Dshi_2428 0.29 +0.0
2,569,635 - Dshi_2428 0.50 -1.7
2,569,655 - Dshi_2428 0.54 -0.7
2,569,765 - Dshi_2428 0.74 -0.1
2,569,767 - Dshi_2428 0.74 -0.0
2,569,798 + Dshi_2428 0.80 +0.6
2,569,821 + Dshi_2428 0.85 +1.5
2,569,831 + Dshi_2428 0.86 +0.2
2,569,896 - -0.4
2,569,949 + +0.2
2,570,074 - +0.6

Or see this region's nucleotide sequence