Experiment: m.b. copper (II) chloride 0.64 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2426 and Dshi_2427 are separated by 185 nucleotides Dshi_2427 and Dshi_2428 are separated by 5 nucleotides Dshi_2428 and Dshi_2429 are separated by 323 nucleotides
Dshi_2426: Dshi_2426 - peptidase S8 and S53 subtilisin kexin sedolisin (RefSeq), at 2,567,452 to 2,568,609
_2426
Dshi_2427: Dshi_2427 - hypothetical protein (RefSeq), at 2,568,795 to 2,569,361
_2427
Dshi_2428: Dshi_2428 - RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq), at 2,569,367 to 2,569,903
_2428
Dshi_2429: Dshi_2429 - Rhamnulokinase RhaK in alpha-proteobacteria (EC 2.7.1.5) (from data) , at 2,570,227 to 2,571,612
_2429
Position (kb)
2568
2569
2570 Strain fitness (log2 ratio)
-2
-1
0
1 at 2567.899 kb on - strand, within Dshi_2426 at 2568.006 kb on + strand, within Dshi_2426 at 2568.014 kb on - strand, within Dshi_2426 at 2568.123 kb on + strand, within Dshi_2426 at 2568.136 kb on - strand, within Dshi_2426 at 2568.207 kb on - strand, within Dshi_2426 at 2568.224 kb on + strand, within Dshi_2426 at 2568.277 kb on + strand, within Dshi_2426 at 2568.390 kb on + strand, within Dshi_2426 at 2568.507 kb on - strand at 2568.542 kb on - strand at 2568.552 kb on - strand at 2568.552 kb on - strand at 2568.669 kb on + strand at 2568.669 kb on + strand at 2568.669 kb on + strand at 2568.677 kb on - strand at 2568.692 kb on + strand at 2568.692 kb on + strand at 2568.692 kb on + strand at 2568.692 kb on - strand at 2568.700 kb on - strand at 2568.726 kb on + strand at 2568.726 kb on + strand at 2568.759 kb on + strand at 2568.881 kb on + strand, within Dshi_2427 at 2568.968 kb on + strand, within Dshi_2427 at 2568.981 kb on - strand, within Dshi_2427 at 2568.987 kb on + strand, within Dshi_2427 at 2569.081 kb on - strand, within Dshi_2427 at 2569.249 kb on + strand, within Dshi_2427 at 2569.280 kb on - strand, within Dshi_2427 at 2569.394 kb on + strand at 2569.520 kb on - strand, within Dshi_2428 at 2569.522 kb on + strand, within Dshi_2428 at 2569.635 kb on - strand, within Dshi_2428 at 2569.655 kb on - strand, within Dshi_2428 at 2569.765 kb on - strand, within Dshi_2428 at 2569.767 kb on - strand, within Dshi_2428 at 2569.798 kb on + strand, within Dshi_2428 at 2569.821 kb on + strand, within Dshi_2428 at 2569.831 kb on + strand, within Dshi_2428 at 2569.896 kb on - strand at 2569.949 kb on + strand at 2570.074 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.64 mM remove 2,567,899 - Dshi_2426 0.39 +0.6 2,568,006 + Dshi_2426 0.48 +0.9 2,568,014 - Dshi_2426 0.49 +0.6 2,568,123 + Dshi_2426 0.58 +0.2 2,568,136 - Dshi_2426 0.59 +0.2 2,568,207 - Dshi_2426 0.65 +0.9 2,568,224 + Dshi_2426 0.67 +0.4 2,568,277 + Dshi_2426 0.71 +0.3 2,568,390 + Dshi_2426 0.81 -1.9 2,568,507 - -1.2 2,568,542 - +0.4 2,568,552 - +0.4 2,568,552 - +1.1 2,568,669 + +0.1 2,568,669 + +0.1 2,568,669 + -0.8 2,568,677 - +0.7 2,568,692 + +0.5 2,568,692 + -0.1 2,568,692 + -0.0 2,568,692 - -0.3 2,568,700 - -0.4 2,568,726 + -1.0 2,568,726 + +0.0 2,568,759 + +0.6 2,568,881 + Dshi_2427 0.15 -1.7 2,568,968 + Dshi_2427 0.31 -0.3 2,568,981 - Dshi_2427 0.33 +0.2 2,568,987 + Dshi_2427 0.34 -0.2 2,569,081 - Dshi_2427 0.50 -0.8 2,569,249 + Dshi_2427 0.80 -1.1 2,569,280 - Dshi_2427 0.86 -0.4 2,569,394 + -0.1 2,569,520 - Dshi_2428 0.28 -0.3 2,569,522 + Dshi_2428 0.29 +0.0 2,569,635 - Dshi_2428 0.50 -1.7 2,569,655 - Dshi_2428 0.54 -0.7 2,569,765 - Dshi_2428 0.74 -0.1 2,569,767 - Dshi_2428 0.74 -0.0 2,569,798 + Dshi_2428 0.80 +0.6 2,569,821 + Dshi_2428 0.85 +1.5 2,569,831 + Dshi_2428 0.86 +0.2 2,569,896 - -0.4 2,569,949 + +0.2 2,570,074 - +0.6
Or see this region's nucleotide sequence