Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2382

Experiment: m.b. copper (II) chloride 0.64 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_R0044 and Dshi_2381 are separated by 190 nucleotidesDshi_2381 and Dshi_2382 are separated by 36 nucleotidesDshi_2382 and Dshi_2383 are separated by 411 nucleotides Dshi_R0044: Dshi_R0044 - tRNA-Leu (RefSeq), at 2,515,206 to 2,515,292 _R0044 Dshi_2381: Dshi_2381 - lipoate-protein ligase B (RefSeq), at 2,515,483 to 2,516,145 _2381 Dshi_2382: Dshi_2382 - hypothetical protein (RefSeq), at 2,516,182 to 2,516,721 _2382 Dshi_2383: Dshi_2383 - Cytochrome c oxidase subunit I type (RefSeq), at 2,517,133 to 2,518,809 _2383 Position (kb) 2516 2517Strain fitness (log2 ratio) -2 -1 0 1at 2515.459 kb on + strandat 2516.140 kb on + strandat 2516.200 kb on - strandat 2516.219 kb on - strandat 2516.243 kb on - strand, within Dshi_2382at 2516.249 kb on + strand, within Dshi_2382at 2516.257 kb on - strand, within Dshi_2382at 2516.285 kb on - strand, within Dshi_2382at 2516.668 kb on - strandat 2516.760 kb on + strandat 2516.835 kb on + strandat 2516.958 kb on - strandat 2517.137 kb on - strandat 2517.280 kb on + strandat 2517.395 kb on - strand, within Dshi_2383at 2517.678 kb on - strand, within Dshi_2383

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.64 mM
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2,515,459 + +0.1
2,516,140 + +0.0
2,516,200 - -0.4
2,516,219 - +1.6
2,516,243 - Dshi_2382 0.11 +0.2
2,516,249 + Dshi_2382 0.12 +0.4
2,516,257 - Dshi_2382 0.14 +0.9
2,516,285 - Dshi_2382 0.19 +0.2
2,516,668 - -0.1
2,516,760 + +1.0
2,516,835 + -0.3
2,516,958 - -0.9
2,517,137 - -2.4
2,517,280 + -2.2
2,517,395 - Dshi_2383 0.16 -1.4
2,517,678 - Dshi_2383 0.32 -0.7

Or see this region's nucleotide sequence