Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2032

Experiment: m.b. copper (II) chloride 0.64 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2031 and Dshi_2032 are separated by 117 nucleotidesDshi_2032 and Dshi_2033 are separated by 12 nucleotides Dshi_2031: Dshi_2031 - TRAP dicarboxylate transporter- DctP subunit (RefSeq), at 2,150,586 to 2,151,734 _2031 Dshi_2032: Dshi_2032 - Tripartite ATP-independent periplasmic transporter DctQ component (RefSeq), at 2,151,852 to 2,152,367 _2032 Dshi_2033: Dshi_2033 - TRAP dicarboxylate transporter, DctM subunit (RefSeq), at 2,152,380 to 2,153,708 _2033 Position (kb) 2151 2152 2153Strain fitness (log2 ratio) -1 0 1at 2150.910 kb on + strand, within Dshi_2031at 2150.925 kb on + strand, within Dshi_2031at 2150.925 kb on + strand, within Dshi_2031at 2150.989 kb on + strand, within Dshi_2031at 2151.069 kb on + strand, within Dshi_2031at 2151.151 kb on + strand, within Dshi_2031at 2151.253 kb on + strand, within Dshi_2031at 2151.313 kb on - strand, within Dshi_2031at 2151.432 kb on - strand, within Dshi_2031at 2151.442 kb on - strand, within Dshi_2031at 2151.446 kb on + strand, within Dshi_2031at 2151.538 kb on + strand, within Dshi_2031at 2151.538 kb on + strand, within Dshi_2031at 2151.538 kb on + strand, within Dshi_2031at 2151.538 kb on + strand, within Dshi_2031at 2151.582 kb on - strand, within Dshi_2031at 2151.649 kb on - strandat 2151.666 kb on + strandat 2151.787 kb on - strandat 2151.807 kb on - strandat 2151.807 kb on - strandat 2151.807 kb on - strandat 2151.810 kb on + strandat 2151.838 kb on - strandat 2151.998 kb on - strand, within Dshi_2032at 2152.010 kb on + strand, within Dshi_2032at 2152.136 kb on - strand, within Dshi_2032at 2152.182 kb on + strand, within Dshi_2032at 2152.208 kb on + strand, within Dshi_2032at 2152.272 kb on + strand, within Dshi_2032at 2152.366 kb on - strandat 2152.382 kb on + strandat 2152.532 kb on + strand, within Dshi_2033at 2152.533 kb on + strand, within Dshi_2033at 2152.533 kb on + strand, within Dshi_2033at 2152.541 kb on - strand, within Dshi_2033at 2152.710 kb on + strand, within Dshi_2033at 2152.767 kb on + strand, within Dshi_2033at 2152.861 kb on + strand, within Dshi_2033at 2152.923 kb on + strand, within Dshi_2033at 2152.931 kb on - strand, within Dshi_2033at 2153.054 kb on + strand, within Dshi_2033at 2153.071 kb on + strand, within Dshi_2033at 2153.072 kb on - strand, within Dshi_2033at 2153.208 kb on - strand, within Dshi_2033at 2153.208 kb on - strand, within Dshi_2033at 2153.246 kb on + strand, within Dshi_2033at 2153.254 kb on - strand, within Dshi_2033

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.64 mM
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2,150,910 + Dshi_2031 0.28 -1.3
2,150,925 + Dshi_2031 0.30 +0.5
2,150,925 + Dshi_2031 0.30 -0.5
2,150,989 + Dshi_2031 0.35 -0.5
2,151,069 + Dshi_2031 0.42 +1.5
2,151,151 + Dshi_2031 0.49 -1.1
2,151,253 + Dshi_2031 0.58 -0.8
2,151,313 - Dshi_2031 0.63 -0.2
2,151,432 - Dshi_2031 0.74 -0.0
2,151,442 - Dshi_2031 0.74 -0.1
2,151,446 + Dshi_2031 0.75 -1.1
2,151,538 + Dshi_2031 0.83 -0.7
2,151,538 + Dshi_2031 0.83 -0.1
2,151,538 + Dshi_2031 0.83 +0.0
2,151,538 + Dshi_2031 0.83 +0.3
2,151,582 - Dshi_2031 0.87 +0.3
2,151,649 - -1.3
2,151,666 + -0.3
2,151,787 - -0.7
2,151,807 - -0.4
2,151,807 - -0.8
2,151,807 - +1.2
2,151,810 + -0.3
2,151,838 - +0.1
2,151,998 - Dshi_2032 0.28 +1.1
2,152,010 + Dshi_2032 0.31 -0.1
2,152,136 - Dshi_2032 0.55 -0.7
2,152,182 + Dshi_2032 0.64 -0.4
2,152,208 + Dshi_2032 0.69 -0.3
2,152,272 + Dshi_2032 0.81 +1.5
2,152,366 - -1.2
2,152,382 + -0.6
2,152,532 + Dshi_2033 0.11 +0.6
2,152,533 + Dshi_2033 0.12 -1.2
2,152,533 + Dshi_2033 0.12 -0.3
2,152,541 - Dshi_2033 0.12 -0.9
2,152,710 + Dshi_2033 0.25 +0.9
2,152,767 + Dshi_2033 0.29 +0.1
2,152,861 + Dshi_2033 0.36 -1.5
2,152,923 + Dshi_2033 0.41 -1.3
2,152,931 - Dshi_2033 0.41 -0.9
2,153,054 + Dshi_2033 0.51 +1.5
2,153,071 + Dshi_2033 0.52 -1.2
2,153,072 - Dshi_2033 0.52 -0.5
2,153,208 - Dshi_2033 0.62 +0.5
2,153,208 - Dshi_2033 0.62 -0.2
2,153,246 + Dshi_2033 0.65 +1.0
2,153,254 - Dshi_2033 0.66 -0.5

Or see this region's nucleotide sequence