Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1775

Experiment: m.b. copper (II) chloride 0.64 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1773 and Dshi_1774 are separated by 39 nucleotidesDshi_1774 and Dshi_1775 are separated by 67 nucleotidesDshi_1775 and Dshi_R0032 are separated by 93 nucleotidesDshi_R0032 and Dshi_1776 are separated by 166 nucleotidesDshi_1776 and Dshi_1777 are separated by 77 nucleotides Dshi_1773: Dshi_1773 - peptidase M48 Ste24p (RefSeq), at 1,839,968 to 1,840,660 _1773 Dshi_1774: Dshi_1774 - hypothetical protein (RefSeq), at 1,840,700 to 1,840,987 _1774 Dshi_1775: Dshi_1775 - (Glutamate--ammonia-ligase) adenylyltransferase (RefSeq), at 1,841,055 to 1,843,865 _1775 Dshi_R0032: Dshi_R0032 - tRNA-Val (RefSeq), at 1,843,959 to 1,844,033 _R0032 Dshi_1776: Dshi_1776 - hypothetical protein (RefSeq), at 1,844,200 to 1,844,541 _1776 Dshi_1777: Dshi_1777 - ATP-dependent protease La (RefSeq), at 1,844,619 to 1,847,027 _1777 Position (kb) 1841 1842 1843 1844Strain fitness (log2 ratio) -2 -1 0 1at 1840.263 kb on + strand, within Dshi_1773at 1840.493 kb on - strand, within Dshi_1773at 1840.620 kb on + strandat 1840.652 kb on - strandat 1840.718 kb on - strandat 1841.243 kb on - strandat 1842.010 kb on - strand, within Dshi_1775at 1842.054 kb on + strand, within Dshi_1775at 1842.289 kb on - strand, within Dshi_1775at 1842.578 kb on + strand, within Dshi_1775at 1842.629 kb on + strand, within Dshi_1775at 1842.769 kb on - strand, within Dshi_1775at 1842.811 kb on + strand, within Dshi_1775at 1842.905 kb on + strand, within Dshi_1775at 1843.076 kb on - strand, within Dshi_1775at 1843.334 kb on + strand, within Dshi_1775at 1843.952 kb on - strandat 1844.255 kb on + strand, within Dshi_1776at 1844.397 kb on - strand, within Dshi_1776at 1844.534 kb on - strandat 1844.564 kb on - strandat 1844.715 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.64 mM
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1,840,263 + Dshi_1773 0.43 +0.1
1,840,493 - Dshi_1773 0.76 -1.1
1,840,620 + +0.2
1,840,652 - +0.8
1,840,718 - +1.6
1,841,243 - -2.1
1,842,010 - Dshi_1775 0.34 +0.5
1,842,054 + Dshi_1775 0.36 -2.1
1,842,289 - Dshi_1775 0.44 -0.5
1,842,578 + Dshi_1775 0.54 -0.2
1,842,629 + Dshi_1775 0.56 -1.3
1,842,769 - Dshi_1775 0.61 -1.1
1,842,811 + Dshi_1775 0.62 -0.8
1,842,905 + Dshi_1775 0.66 -1.3
1,843,076 - Dshi_1775 0.72 -1.1
1,843,334 + Dshi_1775 0.81 -1.1
1,843,952 - -0.1
1,844,255 + Dshi_1776 0.16 -0.2
1,844,397 - Dshi_1776 0.58 -1.1
1,844,534 - -0.8
1,844,564 - -0.8
1,844,715 - +1.0

Or see this region's nucleotide sequence