Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0145

Experiment: m.b. copper (II) chloride 0.64 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0144 and Dshi_0145 are separated by 160 nucleotidesDshi_0145 and Dshi_0146 are separated by 8 nucleotides Dshi_0144: Dshi_0144 - ammonium transporter (RefSeq), at 143,570 to 144,883 _0144 Dshi_0145: Dshi_0145 - Aspartate transaminase (RefSeq), at 145,044 to 146,222 _0145 Dshi_0146: Dshi_0146 - Rhodanese domain protein (RefSeq), at 146,231 to 147,106 _0146 Position (kb) 145 146 147Strain fitness (log2 ratio) -2 -1 0 1at 144.199 kb on - strand, within Dshi_0144at 144.224 kb on - strand, within Dshi_0144at 144.240 kb on - strand, within Dshi_0144at 144.264 kb on + strand, within Dshi_0144at 144.304 kb on - strand, within Dshi_0144at 144.456 kb on - strand, within Dshi_0144at 144.472 kb on - strand, within Dshi_0144at 144.513 kb on + strand, within Dshi_0144at 144.570 kb on + strand, within Dshi_0144at 144.630 kb on + strand, within Dshi_0144at 144.677 kb on - strand, within Dshi_0144at 144.711 kb on - strand, within Dshi_0144at 144.761 kb on - strandat 144.761 kb on - strandat 144.869 kb on - strandat 144.885 kb on - strandat 144.949 kb on - strandat 144.949 kb on - strandat 144.956 kb on + strandat 144.964 kb on + strandat 144.988 kb on - strandat 145.037 kb on + strandat 145.258 kb on + strand, within Dshi_0145at 145.260 kb on - strand, within Dshi_0145at 145.316 kb on + strand, within Dshi_0145at 145.364 kb on + strandat 145.412 kb on - strand, within Dshi_0145at 145.522 kb on + strand, within Dshi_0145at 145.726 kb on + strand, within Dshi_0145at 146.384 kb on - strand, within Dshi_0146at 146.509 kb on - strand, within Dshi_0146at 146.531 kb on - strand, within Dshi_0146at 146.600 kb on - strand, within Dshi_0146at 146.625 kb on + strand, within Dshi_0146at 146.725 kb on - strand, within Dshi_0146at 146.783 kb on - strand, within Dshi_0146at 147.023 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.64 mM
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144,199 - Dshi_0144 0.48 -0.3
144,224 - Dshi_0144 0.50 +1.1
144,240 - Dshi_0144 0.51 -0.2
144,264 + Dshi_0144 0.53 -0.6
144,304 - Dshi_0144 0.56 +1.3
144,456 - Dshi_0144 0.67 -0.1
144,472 - Dshi_0144 0.69 -0.3
144,513 + Dshi_0144 0.72 +0.4
144,570 + Dshi_0144 0.76 -0.0
144,630 + Dshi_0144 0.81 +0.1
144,677 - Dshi_0144 0.84 +0.7
144,711 - Dshi_0144 0.87 -0.5
144,761 - +1.0
144,761 - -0.2
144,869 - +1.0
144,885 - -1.3
144,949 - -0.1
144,949 - -2.3
144,956 + -0.2
144,964 + +0.4
144,988 - -0.1
145,037 + -0.3
145,258 + Dshi_0145 0.18 +1.2
145,260 - Dshi_0145 0.18 +1.2
145,316 + Dshi_0145 0.23 +0.2
145,364 + -1.3
145,412 - Dshi_0145 0.31 +0.2
145,522 + Dshi_0145 0.41 -1.0
145,726 + Dshi_0145 0.58 -0.5
146,384 - Dshi_0146 0.17 +0.1
146,509 - Dshi_0146 0.32 -0.9
146,531 - Dshi_0146 0.34 -0.7
146,600 - Dshi_0146 0.42 -0.4
146,625 + Dshi_0146 0.45 +0.0
146,725 - Dshi_0146 0.56 -1.8
146,783 - Dshi_0146 0.63 +0.0
147,023 + +0.7

Or see this region's nucleotide sequence