Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3997

Experiment: BHIS with Cephalothin 0.625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT3996 and BT3997 are separated by 21 nucleotidesBT3997 and BT3998 are separated by 1 nucleotides BT3996: BT3996 - putative peptidase (NCBI ptt file), at 5,208,126 to 5,209,094 BT3996 BT3997: BT3997 - transcriptional regulator (NCBI ptt file), at 5,209,116 to 5,209,457 BT3997 BT3998: BT3998 - GTP pyrophosphokinase (NCBI ptt file), at 5,209,459 to 5,211,702 BT3998 Position (kb) 5209 5210Strain fitness (log2 ratio) -3 -2 -1 0 1at 5208.168 kb on + strandat 5208.168 kb on + strandat 5208.335 kb on + strand, within BT3996at 5208.335 kb on + strand, within BT3996at 5208.335 kb on + strand, within BT3996at 5208.408 kb on + strand, within BT3996at 5208.520 kb on + strand, within BT3996at 5208.544 kb on + strand, within BT3996at 5208.561 kb on + strand, within BT3996at 5208.596 kb on + strand, within BT3996at 5208.596 kb on + strand, within BT3996at 5208.768 kb on + strand, within BT3996at 5208.793 kb on + strand, within BT3996at 5208.882 kb on + strand, within BT3996at 5208.882 kb on + strand, within BT3996at 5208.884 kb on + strand, within BT3996at 5208.941 kb on + strand, within BT3996at 5208.941 kb on + strand, within BT3996at 5209.014 kb on + strandat 5209.014 kb on + strandat 5209.014 kb on + strandat 5209.044 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction BHIS with Cephalothin 0.625 mg/ml
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5,208,168 + -0.5
5,208,168 + -1.2
5,208,335 + BT3996 0.22 -2.7
5,208,335 + BT3996 0.22 -1.9
5,208,335 + BT3996 0.22 -3.4
5,208,408 + BT3996 0.29 -0.2
5,208,520 + BT3996 0.41 -2.4
5,208,544 + BT3996 0.43 -0.9
5,208,561 + BT3996 0.45 -0.8
5,208,596 + BT3996 0.49 -3.0
5,208,596 + BT3996 0.49 -2.0
5,208,768 + BT3996 0.66 -1.3
5,208,793 + BT3996 0.69 -0.1
5,208,882 + BT3996 0.78 -1.3
5,208,882 + BT3996 0.78 -1.3
5,208,884 + BT3996 0.78 +0.5
5,208,941 + BT3996 0.84 -2.0
5,208,941 + BT3996 0.84 -0.5
5,209,014 + -2.5
5,209,014 + -0.3
5,209,014 + -2.9
5,209,044 + -3.1

Or see this region's nucleotide sequence