Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3537

Experiment: BHIS with Cephalothin 0.625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Cephalothin 0.625 mg/ml
4,574,476	+		BT3536	0.28	-2.3
4,574,476	+		BT3536	0.28	-1.2
4,574,477	-		BT3536	0.28	+0.8
4,574,477	-		BT3536	0.28	+2.3
4,574,477	-		BT3536	0.28	+1.6
4,574,478	+		BT3536	0.28	-0.5
4,574,479	-		BT3536	0.28	-2.2
4,574,479	-		BT3536	0.28	-0.4
4,574,479	-		BT3536	0.28	+0.5
4,574,479	-		BT3536	0.28	+0.2
4,574,487	-		BT3536	0.29	-2.4
4,574,491	-		BT3536	0.29	+1.3
4,574,608	+		BT3536	0.41	-0.7
4,574,609	-		BT3536	0.41	+0.1
4,574,609	-		BT3536	0.41	+0.3
4,574,743	-		BT3536	0.55	+1.4
4,574,751	-		BT3536	0.55	-0.1
4,574,755	+		BT3536	0.56	-0.3
4,574,756	-		BT3536	0.56	+0.5
4,574,778	+		BT3536	0.58	-0.8
4,574,816	+		BT3536	0.62	-0.4
4,574,865	+		BT3536	0.67	+2.5
4,574,886	+		BT3536	0.69	+1.2
4,574,886	+		BT3536	0.69	+0.7
4,574,887	-		BT3536	0.69	+0.6
4,574,887	-		BT3536	0.69	-0.3
4,574,890	-		BT3536	0.69	-0.3
4,574,911	+		BT3536	0.72	+0.0
4,574,934	+		BT3536	0.74	-0.1
4,574,934	+		BT3536	0.74	+1.3
4,574,934	+		BT3536	0.74	-0.5
4,574,935	-		BT3536	0.74	-0.2
4,574,935	-		BT3536	0.74	-2.0
4,574,949	+		BT3536	0.75	-0.0
4,574,950	-		BT3536	0.76	+0.1
4,574,967	-		BT3536	0.77	+1.3
4,574,967	-		BT3536	0.77	+0.4
4,574,985	-		BT3536	0.79	+0.4
4,575,011	-		BT3536	0.82	+0.1
4,575,011	-		BT3536	0.82	+0.8
4,575,064	+		BT3536	0.87	+0.0
4,575,067	+		BT3536	0.87	+0.3
4,575,068	-		BT3536	0.87	-0.7
4,575,084	-		BT3536	0.89	-1.4
4,575,119	+				-0.9
4,575,120	-				-0.2
4,575,150	+				-1.7
4,575,204	-				+0.0
4,575,225	+				-2.7
4,575,226	-				+1.3
4,575,226	-				+1.5
4,575,280	+				+0.1
4,575,281	-				+0.7
4,575,282	+				+0.2
4,575,284	+				+1.3
4,575,285	-				-0.9
4,575,285	-				-1.4
4,575,285	-				-0.3
4,575,287	-				+0.3
4,575,287	-				+0.1
4,575,287	-				-0.1
4,575,288	+				-0.1
4,575,291	-				-0.4
4,575,293	+				-0.3
4,575,356	+				-2.6
4,575,357	-				+0.8
4,575,397	+				+1.1
4,575,398	-				+1.3
4,575,417	+				-0.4
4,575,418	-				+2.3
4,575,418	-				+1.2
4,575,420	-				+0.1
4,575,440	+				+0.2
4,575,472	-				+0.5
4,575,472	-				+0.5
4,575,474	+				-1.7
4,575,481	+				+0.1
4,575,505	-		BT3537	0.17	-0.9
4,575,508	-		BT3537	0.19	-0.3
4,575,508	-		BT3537	0.19	+1.1
4,575,579	-		BT3537	0.48	-0.3
4,575,608	+		BT3537	0.60	+0.4
4,575,608	+		BT3537	0.60	+2.0
4,575,614	-		BT3537	0.62	+0.2
4,575,630	+		BT3537	0.69	+1.3
4,575,631	-		BT3537	0.69	+0.3
4,575,631	-		BT3537	0.69	-0.5
4,575,648	-		BT3537	0.76	+1.1
4,575,653	+		BT3537	0.78	+1.1
4,575,661	+		BT3537	0.81	+1.4
4,575,661	+		BT3537	0.81	-1.1
4,575,662	-		BT3537	0.82	+0.9
4,575,662	-		BT3537	0.82	-0.8
4,575,683	+				+0.4
4,575,684	-				-0.8
4,575,685	+				+2.1
4,575,686	-				+0.9
4,575,708	-				+0.3
4,575,720	+				+0.7
4,575,764	+				+0.3
4,575,765	-				+1.5
4,575,765	-				-0.1
4,575,814	+				+0.2
4,575,822	+				+0.9
4,575,828	+				-0.0
4,575,829	-				+0.7
4,575,829	-				-1.2
4,575,844	+				+0.3
4,575,845	-				-0.3
4,575,886	-				+1.4
4,575,886	-				-2.0
4,575,886	-				-0.3
4,575,899	+		BT3538	0.11	-2.4
4,575,930	-		BT3538	0.15	-1.6
4,575,956	+		BT3538	0.18	+0.3
4,575,996	+		BT3538	0.23	+0.1
4,576,095	-		BT3538	0.35	-0.3
4,576,137	+		BT3538	0.40	+0.6
4,576,137	+		BT3538	0.40	-0.7
4,576,141	-		BT3538	0.41	-0.0
4,576,141	-		BT3538	0.41	-0.1
4,576,155	+		BT3538	0.43	-2.1
4,576,194	+		BT3538	0.47	+0.7
4,576,195	-		BT3538	0.47	-0.9
4,576,195	-		BT3538	0.47	+0.3
4,576,198	+		BT3538	0.48	-1.3
4,576,208	-		BT3538	0.49	-0.0
4,576,208	-		BT3538	0.49	+0.1
4,576,315	-		BT3538	0.62	-0.6
4,576,345	+		BT3538	0.66	+0.3
4,576,345	+		BT3538	0.66	-2.8
4,576,346	-		BT3538	0.66	+0.7
4,576,347	+		BT3538	0.66	+1.3
4,576,348	-		BT3538	0.66	-1.7
4,576,348	-		BT3538	0.66	+0.8
4,576,459	+		BT3538	0.80	-1.6
4,576,572	+				-1.7
4,576,573	-				+1.3
4,576,573	-				+1.4
4,576,620	-				-0.3
4,576,643	-				-0.7
4,576,671	+		BT3539	0.18	+0.0
4,576,671	+		BT3539	0.18	-0.5
4,576,687	-		BT3539	0.24	+0.6
4,576,687	-		BT3539	0.24	-0.4
4,576,687	-		BT3539	0.24	-0.3
4,576,692	-		BT3539	0.26	-1.4
4,576,694	+		BT3539	0.26	+0.1
4,576,694	+		BT3539	0.26	+0.4
4,576,695	-		BT3539	0.27	+0.6