Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3008

Experiment: BHIS with Cephalothin 0.625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Cephalothin 0.625 mg/ml
3,795,566	-				-1.2
3,795,582	-				-0.5
3,795,609	+				+0.8
3,795,633	+				+1.4
3,795,634	-				-1.1
3,795,682	+				-1.6
3,795,730	+		BT3007	0.14	-0.1
3,795,781	+		BT3007	0.19	-1.2
3,795,781	+		BT3007	0.19	-3.0
3,795,781	+		BT3007	0.19	+1.0
3,795,821	-		BT3007	0.24	+0.1
3,795,824	+		BT3007	0.24	-1.6
3,795,826	+		BT3007	0.24	-0.9
3,795,826	+		BT3007	0.24	-0.2
3,795,826	+		BT3007	0.24	-0.7
3,795,827	-		BT3007	0.25	-1.5
3,795,827	-		BT3007	0.25	+0.4
3,795,859	+		BT3007	0.28	-0.8
3,795,860	-		BT3007	0.28	-2.9
3,795,921	+		BT3007	0.35	-0.5
3,795,925	+		BT3007	0.36	+0.4
3,795,960	+		BT3007	0.40	-0.6
3,796,001	+		BT3007	0.44	-1.2
3,796,044	-		BT3007	0.49	+1.4
3,796,077	+		BT3007	0.53	+0.7
3,796,091	+		BT3007	0.55	+1.2
3,796,092	-		BT3007	0.55	-0.1
3,796,172	+		BT3007	0.64	+0.3
3,796,173	-		BT3007	0.64	+0.5
3,796,173	-		BT3007	0.64	-1.2
3,796,179	-		BT3007	0.65	-0.3
3,796,179	-		BT3007	0.65	-1.1
3,796,214	-		BT3007	0.69	+0.1
3,796,214	-		BT3007	0.69	-1.0
3,796,214	-		BT3007	0.69	-1.1
3,796,375	-		BT3007	0.87	-0.2
3,796,377	+		BT3007	0.87	-0.6
3,796,377	+		BT3007	0.87	-2.2
3,796,472	+				-1.0
3,796,479	+				+0.1
3,796,480	-				-2.5
3,796,480	-				-1.1
3,796,480	-				-0.5
3,796,496	-				-1.1
3,796,503	+				-0.2
3,796,503	+				+0.9
3,796,504	-				+0.5
3,796,504	-				-0.2
3,796,505	+				-2.3
3,796,526	+				-2.1
3,796,526	+				+1.4
3,796,526	+				+0.3
3,796,526	+				+0.3
3,796,527	-				-0.9
3,796,527	-				+0.8
3,796,585	+				-0.6
3,796,585	+				+1.4
3,796,586	-				-1.9
3,796,624	+				-0.6
3,796,624	+				+1.4
3,796,625	-				-0.1
3,796,629	-				+0.2
3,796,697	+		BT3008	0.14	-0.1
3,796,698	-		BT3008	0.14	+0.0
3,796,698	-		BT3008	0.14	-1.2
3,796,706	+		BT3008	0.15	-1.4
3,796,706	+		BT3008	0.15	-0.5
3,796,708	+		BT3008	0.15	+1.0
3,796,708	+		BT3008	0.15	+1.2
3,796,708	+		BT3008	0.15	-2.0
3,796,709	-		BT3008	0.15	-0.6
3,796,822	+		BT3008	0.25	-0.5
3,796,867	+		BT3008	0.28	-0.7
3,796,867	+		BT3008	0.28	-0.8
3,796,868	-		BT3008	0.28	-0.4
3,796,924	+		BT3008	0.33	-2.2
3,796,925	-		BT3008	0.33	-0.6
3,796,973	+		BT3008	0.37	-2.1
3,797,168	-		BT3008	0.54	-0.2
3,797,186	-		BT3008	0.55	-0.7
3,797,196	-		BT3008	0.56	-0.2
3,797,212	+		BT3008	0.57	-1.6
3,797,212	+		BT3008	0.57	-1.4
3,797,212	+		BT3008	0.57	-2.3
3,797,248	+		BT3008	0.60	-0.3
3,797,371	-		BT3008	0.71	-2.0
3,797,451	-		BT3008	0.78	-1.5
3,797,516	+		BT3008	0.83	+0.5
3,797,517	-		BT3008	0.83	-0.3
3,797,546	-		BT3008	0.86	-0.7
3,797,579	+		BT3008	0.88	-2.7
3,797,588	-		BT3008	0.89	-1.7
3,797,723	+				-0.8
3,797,724	-				+1.9
3,797,733	-				-1.4
3,797,733	-				-2.4
3,797,733	-				-2.7
3,797,733	-				-2.3
3,797,758	+				-1.8
3,797,766	+				+0.8
3,797,766	+				+0.7
3,797,767	-				-0.8
3,797,769	-				+0.9
3,797,870	-				-0.6
3,797,956	+				-1.0
3,797,956	+				+1.4
3,797,964	+				+0.4
3,797,964	+				-2.7
3,798,009	-				-0.3
3,798,012	-				+0.1
3,798,012	-				-2.0
3,798,063	+				+0.5
3,798,071	+				+0.0
3,798,071	+				-1.4
3,798,071	+				-0.1
3,798,072	-				-3.0
3,798,072	-				-0.7
3,798,106	-				+0.0
3,798,108	+				+0.3
3,798,109	-				-1.2
3,798,156	-				+1.6
3,798,157	-				-2.7
3,798,157	-				-0.7
3,798,157	-				+1.4
3,798,157	-				+0.0
3,798,160	+				+0.7
3,798,161	-				+0.4
3,798,252	-				-1.6
3,798,261	+				+0.8
3,798,262	-				+1.4
3,798,331	+		BT3009	0.12	+1.0
3,798,333	+		BT3009	0.12	+0.5
3,798,343	-		BT3009	0.13	-1.3
3,798,364	-		BT3009	0.13	+0.5
3,798,420	+		BT3009	0.16	+1.0
3,798,421	-		BT3009	0.16	-1.6
3,798,422	+		BT3009	0.16	+1.4
3,798,422	+		BT3009	0.16	-0.2
3,798,422	+		BT3009	0.16	+0.9
3,798,422	+		BT3009	0.16	+0.1
3,798,422	+		BT3009	0.16	-2.1
3,798,423	-		BT3009	0.16	-1.1
3,798,427	-		BT3009	0.16	+1.9
3,798,428	+		BT3009	0.16	+0.8
3,798,429	-		BT3009	0.16	+1.4
3,798,450	-		BT3009	0.17	+0.4
3,798,484	-		BT3009	0.18	-0.2
3,798,585	+		BT3009	0.22	-1.2
3,798,585	+		BT3009	0.22	+0.0
3,798,586	-		BT3009	0.22	-0.4
3,798,586	-		BT3009	0.22	-1.0
3,798,586	-		BT3009	0.22	-0.8
3,798,703	+		BT3009	0.27	+0.7
3,798,717	+		BT3009	0.27	+1.1