Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1785

Experiment: BHIS with Cephalothin 0.625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Cephalothin 0.625 mg/ml
2,230,798	+				-1.9
2,230,798	+				+1.1
2,230,799	-				+1.7
2,230,802	+				+0.1
2,230,803	-				-1.0
2,230,838	-				+0.4
2,230,871	+				-3.6
2,230,924	+				-1.2
2,230,964	+				-1.3
2,230,972	+				-1.9
2,230,994	-				-0.4
2,231,003	-				+1.5
2,231,035	-				-1.7
2,231,137	+				-0.7
2,231,138	-				-0.1
2,231,197	-				+0.9
2,231,388	-		BT1784	0.38	-1.7
2,231,393	+		BT1784	0.39	-0.5
2,231,398	+		BT1784	0.40	+0.2
2,231,399	-		BT1784	0.40	-2.3
2,231,399	-		BT1784	0.40	-0.5
2,231,400	+		BT1784	0.40	+0.0
2,231,545	+		BT1784	0.68	+1.9
2,231,554	-		BT1784	0.70	+1.4
2,231,647	+		BT1784	0.88	-2.2
2,231,648	-		BT1784	0.88	+0.6
2,231,669	-				-1.1
2,231,669	-				-1.9
2,231,682	-				-0.8
2,231,686	-				+2.4
2,231,704	+				+0.2
2,231,811	+				-1.4
2,231,813	+				+0.6
2,231,814	-				+0.8
2,231,898	+				-0.4
2,231,898	+				+1.9
2,231,998	-		BT1785	0.17	-1.3
2,232,000	-		BT1785	0.17	+0.0
2,232,046	-		BT1785	0.21	-1.1
2,232,064	-		BT1785	0.22	-0.6
2,232,064	-		BT1785	0.22	-0.1
2,232,107	-		BT1785	0.26	-1.1
2,232,108	+		BT1785	0.26	-0.6
2,232,180	+		BT1785	0.32	+0.9
2,232,185	+		BT1785	0.32	-3.1
2,232,186	-		BT1785	0.33	-0.1
2,232,357	+		BT1785	0.47	-1.9
2,232,357	+		BT1785	0.47	+0.3
2,232,358	-		BT1785	0.47	-0.7
2,232,358	-		BT1785	0.47	-1.1
2,232,360	-		BT1785	0.47	-0.5
2,232,363	+		BT1785	0.47	-1.8
2,232,365	+		BT1785	0.47	+1.0
2,232,366	-		BT1785	0.47	+0.3
2,232,408	+		BT1785	0.51	-0.7
2,232,409	-		BT1785	0.51	-0.2
2,232,451	-		BT1785	0.54	-0.5
2,232,464	+		BT1785	0.56	-1.7
2,232,519	+		BT1785	0.60	-1.5
2,232,567	+		BT1785	0.64	+0.1
2,232,568	-		BT1785	0.64	-1.5
2,232,616	+		BT1785	0.68	-1.5
2,232,616	+		BT1785	0.68	-2.6
2,232,617	-		BT1785	0.68	-1.5
2,232,617	-		BT1785	0.68	-2.8
2,232,617	-		BT1785	0.68	+1.9
2,232,816	+		BT1785	0.85	-0.6
2,232,817	-		BT1785	0.85	+1.9
2,232,819	+		BT1785	0.85	-0.6
2,232,819	+				-0.1
2,232,820	-		BT1785	0.85	-1.0
2,232,956	-				+0.1
2,232,973	-				-0.1
2,232,983	-				-1.1
2,232,983	-				-0.4
2,232,983	-				+0.9
2,233,004	+				-1.1
2,233,015	+				+0.9
2,233,018	+				-0.4
2,233,032	+				+2.5
2,233,033	-				-1.6
2,233,040	+				+0.1
2,233,094	+				+0.9
2,233,185	-		BT1786	0.14	-0.1
2,233,203	-		BT1786	0.15	+1.3
2,233,214	-		BT1786	0.16	+2.1
2,233,221	-		BT1786	0.17	+0.7
2,233,250	+		BT1786	0.19	-0.4
2,233,333	+		BT1786	0.25	+0.3
2,233,345	+		BT1786	0.26	-0.7
2,233,346	-		BT1786	0.26	+0.2
2,233,346	-		BT1786	0.26	+0.1
2,233,346	-		BT1786	0.26	-0.1
2,233,346	-		BT1786	0.26	-0.5
2,233,349	+		BT1786	0.26	-0.6
2,233,350	-		BT1786	0.26	-0.3
2,233,363	+		BT1786	0.27	+0.7
2,233,365	+		BT1786	0.28	+0.9
2,233,365	+		BT1786	0.28	-0.1
2,233,447	+		BT1786	0.34	+0.6
2,233,447	+		BT1786	0.34	-0.0
2,233,447	+		BT1786	0.34	-0.1
2,233,448	-		BT1786	0.34	-0.1
2,233,471	+		BT1786	0.36	-0.0
2,233,471	+		BT1786	0.36	+0.4
2,233,472	-		BT1786	0.36	+0.3
2,233,542	-		BT1786	0.41	+0.7
2,233,542	-		BT1786	0.41	+0.3
2,233,545	-		BT1786	0.41	-1.7
2,233,547	+		BT1786	0.41	+0.1
2,233,570	+		BT1786	0.43	-3.4
2,233,640	-		BT1786	0.48	-1.1
2,233,757	+		BT1786	0.57	+0.2
2,233,758	-		BT1786	0.57	-0.4
2,233,784	+		BT1786	0.59	-0.4
2,233,858	-		BT1786	0.64	+0.6
2,233,880	+		BT1786	0.66	+0.7
2,233,891	+		BT1786	0.67	+0.6
2,233,896	-		BT1786	0.67	-0.5
2,233,908	-		BT1786	0.68	-1.7
2,233,960	-		BT1786	0.72	-0.1
2,233,960	-		BT1786	0.72	-1.9
2,233,960	-		BT1786	0.72	-0.1
2,233,976	-		BT1786	0.73	-1.4
2,233,986	-		BT1786	0.74	-0.6