Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1900

Experiment: Lactate-Sulfate (60-30 mM) minimal (MoLS4)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntglyQ and DVU1899 are separated by 49 nucleotidesDVU1899 and DVU1900 are separated by 2 nucleotidesDVU1900 and DVU1901 are separated by 96 nucleotides DVU1898: glyQ - glycyl-tRNA synthetase, alpha subunit (TIGR), at 1,972,583 to 1,973,452 glyQ DVU1899: DVU1899 - DNA repair protein RecO, putative (TIGR), at 1,973,502 to 1,974,257 DVU1899 DVU1900: DVU1900 - conserved hypothetical protein (TIGR), at 1,974,260 to 1,975,201 DVU1900 DVU1901: DVU1901 - peptidyl-prolyl cis-trans isomerase domain protein (TIGR), at 1,975,298 to 1,976,233 DVU1901 Position (kb) 1974 1975 1976Strain fitness (log2 ratio) -3 -2 -1 0 1at 1973.462 kb on - strandat 1973.508 kb on - strandat 1973.555 kb on - strandat 1973.555 kb on - strandat 1973.610 kb on - strand, within DVU1899at 1973.617 kb on - strand, within DVU1899at 1973.637 kb on - strand, within DVU1899at 1973.653 kb on + strand, within DVU1899at 1973.687 kb on + strand, within DVU1899at 1973.749 kb on + strand, within DVU1899at 1973.798 kb on + strand, within DVU1899at 1973.855 kb on - strand, within DVU1899at 1973.908 kb on - strand, within DVU1899at 1973.912 kb on + strand, within DVU1899at 1973.954 kb on - strand, within DVU1899at 1974.035 kb on - strand, within DVU1899at 1974.049 kb on + strand, within DVU1899at 1974.115 kb on - strand, within DVU1899at 1974.218 kb on + strandat 1974.416 kb on - strand, within DVU1900at 1974.509 kb on + strand, within DVU1900at 1974.542 kb on + strand, within DVU1900at 1974.696 kb on + strand, within DVU1900at 1974.851 kb on + strand, within DVU1900at 1974.859 kb on - strand, within DVU1900at 1975.016 kb on - strand, within DVU1900at 1975.046 kb on + strand, within DVU1900at 1975.087 kb on - strand, within DVU1900

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactate-Sulfate (60-30 mM) minimal (MoLS4)
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1,973,462 - -2.2
1,973,508 - -0.1
1,973,555 - -0.2
1,973,555 - -0.8
1,973,610 - DVU1899 0.14 -0.5
1,973,617 - DVU1899 0.15 +0.0
1,973,637 - DVU1899 0.18 -0.9
1,973,653 + DVU1899 0.20 +0.1
1,973,687 + DVU1899 0.24 -0.5
1,973,749 + DVU1899 0.33 +0.2
1,973,798 + DVU1899 0.39 +0.4
1,973,855 - DVU1899 0.47 -0.3
1,973,908 - DVU1899 0.54 +0.9
1,973,912 + DVU1899 0.54 -0.7
1,973,954 - DVU1899 0.60 -0.5
1,974,035 - DVU1899 0.71 +0.3
1,974,049 + DVU1899 0.72 -1.0
1,974,115 - DVU1899 0.81 +0.4
1,974,218 + +0.3
1,974,416 - DVU1900 0.17 -0.9
1,974,509 + DVU1900 0.26 -0.3
1,974,542 + DVU1900 0.30 -0.0
1,974,696 + DVU1900 0.46 -0.6
1,974,851 + DVU1900 0.63 -2.7
1,974,859 - DVU1900 0.64 -1.8
1,975,016 - DVU1900 0.80 -3.2
1,975,046 + DVU1900 0.83 -1.8
1,975,087 - DVU1900 0.88 +0.4

Or see this region's nucleotide sequence