Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS18330

Experiment: nitrate (N); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrate (N); with MOPS
4,157,750	+		PFLU_RS30895	0.25	-0.7
4,157,760	+		PFLU_RS30895	0.29	-1.7
4,157,760	+		PFLU_RS30895	0.29	-2.0
4,157,760	+		PFLU_RS30895	0.29	-0.5
4,157,761	-		PFLU_RS30895	0.29	+0.3
4,157,761	-		PFLU_RS30895	0.29	-1.0
4,157,768	+		PFLU_RS30895	0.31	+0.9
4,157,768	+		PFLU_RS30895	0.31	-2.7
4,157,768	+		PFLU_RS30895	0.31	-0.3
4,157,768	+		PFLU_RS30895	0.31	-0.7
4,157,768	+		PFLU_RS30895	0.31	+2.3
4,157,769	-		PFLU_RS30895	0.32	-1.2
4,157,769	-		PFLU_RS30895	0.32	-0.7
4,157,769	-		PFLU_RS30895	0.32	+2.0
4,157,769	-		PFLU_RS30895	0.32	-2.0
4,157,769	-		PFLU_RS30895	0.32	+0.3
4,157,769	-		PFLU_RS30895	0.32	-1.7
4,157,769	-		PFLU_RS30895	0.32	+0.0
4,157,769	-		PFLU_RS30895	0.32	-0.8
4,157,769	-		PFLU_RS30895	0.32	-0.3
4,157,785	+		PFLU_RS30895	0.37	-2.6
4,157,785	+		PFLU_RS30895	0.37	-1.9
4,157,786	-		PFLU_RS30895	0.37	+0.2
4,157,786	-		PFLU_RS30895	0.37	+0.5
4,157,786	-		PFLU_RS30895	0.37	-1.5
4,157,786	-		PFLU_RS30895	0.37	+0.8
4,157,786	-		PFLU_RS30895	0.37	+1.8
4,157,807	+		PFLU_RS30895	0.44	-2.3
4,157,807	+		PFLU_RS30895	0.44	+1.9
4,157,807	+		PFLU_RS30895	0.44	+0.3
4,157,807	+		PFLU_RS30895	0.44	+1.3
4,157,807	+		PFLU_RS30895	0.44	+0.4
4,157,807	+		PFLU_RS30895	0.44	-0.3
4,157,807	+		PFLU_RS30895	0.44	-1.9
4,157,807	+		PFLU_RS30895	0.44	+1.1
4,157,807	+		PFLU_RS30895	0.44	+0.3
4,157,807	+		PFLU_RS30895	0.44	-2.2
4,157,808	-		PFLU_RS30895	0.45	-0.3
4,157,808	-		PFLU_RS30895	0.45	-1.2
4,157,808	-		PFLU_RS30895	0.45	-1.7
4,157,808	-		PFLU_RS30895	0.45	-2.4
4,157,808	-		PFLU_RS30895	0.45	-2.5
4,157,808	-		PFLU_RS30895	0.45	-0.4
4,157,808	-		PFLU_RS30895	0.45	-0.1
4,157,808	-		PFLU_RS30895	0.45	-0.8
4,157,808	-		PFLU_RS30895	0.45	-2.3
4,157,808	-		PFLU_RS30895	0.45	+1.3
4,157,808	-		PFLU_RS30895	0.45	-0.3
4,157,808	-		PFLU_RS30895	0.45	-2.4
4,157,808	-		PFLU_RS30895	0.45	-1.7
4,157,808	-		PFLU_RS30895	0.45	-0.6
4,157,837	+		PFLU_RS30895	0.54	-0.9
4,157,837	+		PFLU_RS30895	0.54	-0.0
4,157,837	+		PFLU_RS30895	0.54	-1.7
4,157,838	-		PFLU_RS30895	0.55	-1.3
4,157,849	+		PFLU_RS30895	0.58	-1.5
4,157,849	+		PFLU_RS30895	0.58	+1.3
4,157,850	-		PFLU_RS30895	0.59	+0.4
4,157,850	-		PFLU_RS30895	0.59	+2.1
4,157,853	+		PFLU_RS30895	0.60	+0.9
4,157,854	-		PFLU_RS30895	0.60	-1.9
4,157,871	+		PFLU_RS30895	0.66	+2.1
4,157,871	+		PFLU_RS30895	0.66	-0.3
4,157,872	-		PFLU_RS30895	0.66	-2.4
4,157,873	+		PFLU_RS30895	0.66	+1.2
4,157,873	+		PFLU_RS30895	0.66	-0.7
4,157,874	-		PFLU_RS30895	0.67	-0.1
4,157,874	-		PFLU_RS30895	0.67	-0.3
4,157,874	-		PFLU_RS30895	0.67	-1.0
4,157,874	-		PFLU_RS30895	0.67	+0.6
4,157,874	-		PFLU_RS30895	0.67	+4.6
4,157,874	-		PFLU_RS30895	0.67	+0.9
4,158,001	+				+1.7
4,158,001	+				-2.2
4,158,001	+				-1.0
4,158,002	-				-1.5
4,158,012	-				-2.7
4,158,139	+				-0.7
4,158,139	+				+0.3
4,158,140	-				+0.2
4,158,145	+				-1.9
4,158,145	+				+1.4
4,158,145	+				+3.9
4,158,145	+				-1.2
4,158,145	+				+1.7
4,158,146	-				+3.0
4,158,146	-				-2.8
4,158,146	-				-1.0
4,158,146	-				+1.0
4,158,146	-				-1.9
4,158,165	+				+0.3
4,158,165	+				-2.2
4,158,166	-				-1.7
4,158,188	+				+1.2
4,158,188	+				+2.0
4,158,188	+				-1.0
4,158,188	+				+0.3
4,158,188	+				+0.3
4,158,188	+				+2.5
4,158,188	+				-1.5
4,158,188	+				-1.0
4,158,188	+				+0.4
4,158,188	+				-1.3
4,158,189	-				-0.9
4,158,189	-				+0.4
4,158,189	-				+1.4
4,158,189	-				+0.7
4,158,189	-				+1.3
4,158,189	-				+1.9
4,158,189	-				+0.5
4,158,192	+				-2.3
4,158,192	+				+1.3
4,158,192	+				-1.0
4,158,192	+				-0.0
4,158,192	+				-0.2
4,158,192	+				+4.0
4,158,192	+				-3.0
4,158,192	+				-2.6
4,158,193	-				+1.1
4,158,193	-				+0.2
4,158,193	-				-1.6
4,158,193	-				+2.9
4,158,193	-				-0.3
4,158,193	-				-2.0
4,158,193	-				-0.7
4,158,193	-				-1.9
4,158,193	-				-0.1
4,158,193	-				-1.5
4,158,193	-				+1.8
4,158,193	-				-1.0
4,158,210	+				+3.2
4,158,210	+				+1.5
4,158,210	+				-1.5
4,158,210	+				+1.5
4,158,210	+				-1.9
4,158,210	+				-2.6
4,158,211	-				-2.6
4,158,230	+				+3.0
4,158,231	-				+0.7
4,158,312	+				+2.3
4,158,312	+				-2.7
4,158,313	-				+0.9
4,158,313	-				-2.2
4,158,313	-				+0.3
4,158,313	-				+1.2
4,158,313	-				-1.8
4,158,313	-				+2.0
4,158,313	-				+1.4
4,158,313	-				-1.5
4,158,315	+				-2.3
4,158,316	-				-1.3
4,158,316	-				-0.3
4,158,319	-				+1.5
4,158,381	+				+0.9
4,158,405	+				+0.8
4,158,405	+				+2.7
4,158,405	+				+1.1
4,158,405	+				+1.5
4,158,406	-				-0.5
4,158,406	-				+0.3
4,158,406	-				+2.3
4,158,482	+				-1.0
4,158,482	+				+1.1
4,158,482	+				-0.4
4,158,482	+				-3.3
4,158,482	+				+0.3
4,158,482	+				+0.3
4,158,482	+				-1.3
4,158,483	-				-1.3
4,158,483	-				+1.7
4,158,483	-				-2.8
4,158,483	-				+2.2
4,158,483	-				-2.9
4,158,483	-				-2.4
4,158,483	-				-1.5
4,158,483	-				+3.0
4,158,483	-				-0.0
4,158,501	+				+0.9
4,158,502	-				-0.3
4,158,538	+				+1.5
4,158,538	+				-0.9
4,158,538	+				+0.1
4,158,538	+				+0.1
4,158,538	+				-1.0
4,158,538	+				-3.7
4,158,539	-				-0.9
4,158,539	-				+1.6
4,158,539	-				+0.4
4,158,539	-				-1.4
4,158,539	-				-0.7
4,158,570	-				-3.0
4,158,590	+				+1.8
4,158,590	+				+0.4
4,158,591	-				+2.2
4,158,591	-				-2.3
4,158,591	-				-1.6
4,158,591	-				-2.2
4,158,591	-				+0.4
4,158,640	+				+0.9
4,158,640	+				+1.6
4,158,640	+				+0.9
4,158,641	-				+1.7
4,158,649	+				-3.3
4,158,651	+				+0.5
4,158,651	+				-3.0
4,158,651	+				+0.5
4,158,651	+				+1.7
4,158,652	-				-2.6
4,158,652	-				+1.2
4,158,652	-				+0.1
4,158,652	-				-0.2
4,158,661	+				+1.5
4,158,673	+				-1.3
4,158,674	-				+0.9
4,158,674	-				-0.7
4,158,689	+				-2.0
4,158,689	+				-0.3
4,158,689	+				+2.3
4,158,689	+				+2.0
4,158,689	+				-0.6
4,158,689	+				+0.6
4,158,689	+				-2.8
4,158,689	+				+1.8
4,158,690	-				+0.1
4,158,690	-				+0.6
4,158,721	+				+2.2
4,158,721	+				+2.8
4,158,721	+				+0.4
4,158,721	+				-0.3
4,158,743	+				+1.1
4,158,744	-				-1.3
4,158,744	-				-3.7
4,158,751	+				-1.9
4,158,751	+				+1.3
4,158,751	+				+1.6
4,158,871	+		PFLU_RS18330	0.20	-2.3
4,158,871	+		PFLU_RS18330	0.20	+1.1
4,158,871	+		PFLU_RS18330	0.20	+1.3
4,158,871	+		PFLU_RS18330	0.20	+0.7
4,158,871	+		PFLU_RS18330	0.20	+0.9
4,158,871	+		PFLU_RS18330	0.20	+1.5
4,158,871	+		PFLU_RS18330	0.20	-0.3
4,158,871	+		PFLU_RS18330	0.20	-0.7
4,158,871	+		PFLU_RS18330	0.20	-1.7
4,158,872	-		PFLU_RS18330	0.20	+0.2
4,158,872	-		PFLU_RS18330	0.20	-0.0
4,158,872	-		PFLU_RS18330	0.20	-1.0
4,158,872	-		PFLU_RS18330	0.20	+0.1
4,158,872	-		PFLU_RS18330	0.20	+0.3
4,158,872	-		PFLU_RS18330	0.20	+0.3
4,159,089	+		PFLU_RS18330	0.45	+0.3
4,159,089	+		PFLU_RS18330	0.45	-1.0
4,159,089	+		PFLU_RS18330	0.45	-0.3
4,159,089	+		PFLU_RS18330	0.45	+0.1
4,159,089	+		PFLU_RS18330	0.45	-2.6
4,159,089	+		PFLU_RS18330	0.45	-2.5
4,159,090	-		PFLU_RS18330	0.46	-0.3
4,159,090	-		PFLU_RS18330	0.46	-0.3
4,159,090	-		PFLU_RS18330	0.46	+0.7
4,159,090	-		PFLU_RS18330	0.46	-2.9
4,159,090	-		PFLU_RS18330	0.46	-2.4
4,159,103	+		PFLU_RS18330	0.47	+1.3
4,159,103	+		PFLU_RS18330	0.47	+1.7
4,159,103	+		PFLU_RS18330	0.47	+0.6
4,159,103	+		PFLU_RS18330	0.47	-1.7
4,159,103	+		PFLU_RS18330	0.47	-2.6
4,159,104	-		PFLU_RS18330	0.47	+1.2
4,159,104	-		PFLU_RS18330	0.47	-3.3
4,159,104	-		PFLU_RS18330	0.47	-2.8
4,159,104	-		PFLU_RS18330	0.47	+0.6
4,159,104	-		PFLU_RS18330	0.47	+0.8
4,159,355	+		PFLU_RS18330	0.76	-2.5
4,159,355	+		PFLU_RS18330	0.76	-2.2
4,159,355	+		PFLU_RS18330	0.76	-0.8
4,159,355	+		PFLU_RS18330	0.76	-0.4
4,159,355	+		PFLU_RS18330	0.76	-0.3
4,159,355	+		PFLU_RS18330	0.76	-2.6
4,159,355	+		PFLU_RS18330	0.76	-2.5
4,159,355	+		PFLU_RS18330	0.76	-1.0
4,159,355	+		PFLU_RS18330	0.76	-1.9
4,159,356	-		PFLU_RS18330	0.76	-1.5
4,159,356	-		PFLU_RS18330	0.76	-2.3
4,159,356	-		PFLU_RS18330	0.76	+3.0
4,159,356	-		PFLU_RS18330	0.76	-2.0
4,159,356	-		PFLU_RS18330	0.76	+1.3
4,159,356	-		PFLU_RS18330	0.76	-2.9
4,159,356	-		PFLU_RS18330	0.76	-2.6
4,159,356	-		PFLU_RS18330	0.76	-1.3
4,159,356	-		PFLU_RS18330	0.76	+0.0
4,159,356	-		PFLU_RS18330	0.76	-1.0
4,159,356	-		PFLU_RS18330	0.76	+4.3
4,159,359	+		PFLU_RS18330	0.76	-0.3
4,159,359	+		PFLU_RS18330	0.76	+1.0
4,159,359	+		PFLU_RS18330	0.76	-1.9
4,159,359	+		PFLU_RS18330	0.76	-1.5
4,159,359	+		PFLU_RS18330	0.76	+0.3
4,159,359	+		PFLU_RS18330	0.76	+0.3
4,159,359	+		PFLU_RS18330	0.76	-0.7
4,159,360	-		PFLU_RS18330	0.77	+2.1
4,159,360	-		PFLU_RS18330	0.77	-2.5
4,159,360	-		PFLU_RS18330	0.77	+0.2
4,159,360	-		PFLU_RS18330	0.77	+2.1
4,159,360	-		PFLU_RS18330	0.77	-1.5
4,159,360	-		PFLU_RS18330	0.77	+1.2
4,159,360	-		PFLU_RS18330	0.77	-1.3
4,159,360	-		PFLU_RS18330	0.77	+0.8
4,159,360	-		PFLU_RS18330	0.77	+1.1
4,159,360	-		PFLU_RS18330	0.77	+0.1
4,159,382	+		PFLU_RS18330	0.79	-0.8
4,159,382	+		PFLU_RS18330	0.79	-2.3
4,159,383	-		PFLU_RS18330	0.79	+0.5
4,159,383	-		PFLU_RS18330	0.79	+1.8
4,159,426	+		PFLU_RS18330	0.84	+0.3
4,159,427	-		PFLU_RS18330	0.84	-2.5
4,159,435	+		PFLU_RS18330	0.85	-1.0
4,159,452	+		PFLU_RS18330	0.87	-2.4
4,159,452	+		PFLU_RS18330	0.87	-3.1
4,159,453	-		PFLU_RS18330	0.87	+1.1
4,159,481	+				+1.1
4,159,481	+				+1.3
4,159,481	+				+1.3
4,159,482	-				-0.9
4,159,482	-				+0.2
4,159,482	-				-0.9
4,159,482	-				-0.8
4,159,482	-				+1.7
4,159,482	-				+0.1
4,159,496	-				-0.3
4,159,508	-				+0.9
4,159,546	+				-2.6
4,159,546	+				-1.3
4,159,546	+				+0.6
4,159,546	+				-0.4
4,159,546	+				+0.3
4,159,546	+				-2.2
4,159,546	+				-1.3
4,159,546	+				-1.3
4,159,546	+				-2.0
4,159,546	+				-2.2
4,159,546	+				-2.2
4,159,546	+				+1.4
4,159,546	+				+0.6
4,159,546	+				+0.2
4,159,546	+				+1.3
4,159,546	+				+0.4
4,159,546	+				-3.3
4,159,546	+				-1.3
4,159,547	-				+1.3
4,159,547	-				-1.0
4,159,547	-				+0.6
4,159,547	-				+0.7
4,159,547	-				-2.5
4,159,547	-				+0.5
4,159,547	-				+2.5
4,159,547	-				+2.7
4,159,547	-				-1.0
4,159,547	-				+1.3
4,159,547	-				+0.4
4,159,547	-				-1.7
4,159,547	-				+1.3
4,159,547	-				-0.5
4,159,547	-				-0.3
4,159,547	-				-2.3
4,159,547	-				+0.5
4,159,547	-				+0.5
4,159,547	-				-0.7
4,159,640	+				-0.8
4,159,640	+				-2.1
4,159,641	-				-1.0
4,159,641	-				-1.9
4,159,654	+				+1.1
4,159,683	+				-0.7
4,159,729	+				+1.0
4,159,730	-				+0.3
4,159,730	-				-0.7
4,159,730	-				+1.3
4,159,730	-				-1.0
4,159,761	-				+2.4
4,159,774	+				-0.7
4,159,774	+				-1.1
4,159,817	+				+0.2
4,159,817	+				+0.7
4,159,817	+				-2.5
4,159,817	+				+1.3
4,159,817	+				-0.7
4,159,817	+				-3.2
4,159,817	+				+2.6
4,159,817	+				-1.0
4,159,817	+				+0.1
4,159,817	+				+3.1
4,159,818	-				-2.5
4,159,818	-				+0.7
4,159,818	-				-0.5
4,159,818	-				+0.8
4,159,818	-				+0.3
4,159,818	-				-2.2
4,159,818	-				-1.0
4,159,832	+				-1.0
4,159,832	+				+1.8
4,159,832	+				-2.7
4,159,832	+				-0.3
4,159,832	+				+0.8
4,159,833	-				+0.1
4,159,833	-				-2.3
4,159,833	-				+1.7
4,159,850	+				+0.8
4,159,914	+				-1.5
4,159,944	+				-1.0
4,159,945	-				+2.3
4,160,022	+		PFLU_RS30900	0.21	-1.9
4,160,155	-		PFLU_RS30900	0.46	-2.9
4,160,334	-		PFLU_RS30900	0.80	+3.6
4,160,356	-		PFLU_RS30900	0.84	-1.5
4,160,416	+				+2.0