Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS17035

Experiment: nitrate (N); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrate (N); with MOPS
3,862,805	-				+1.5
3,862,805	-				-1.0
3,862,858	+				+0.5
3,862,858	+				+0.4
3,862,859	-				-0.4
3,862,907	+				-1.4
3,862,907	+				-0.6
3,862,908	-				+1.2
3,862,953	+				+0.6
3,862,953	+				+0.3
3,862,975	+				+0.6
3,863,056	-				-0.8
3,863,185	+				+0.4
3,863,185	+				+3.2
3,863,264	-				-1.1
3,863,264	-				+1.0
3,863,265	+				+0.8
3,863,265	+				-0.8
3,863,265	+				+0.9
3,863,266	-				-2.3
3,863,266	-				+1.3
3,863,266	-				+1.2
3,863,266	-				+0.9
3,863,266	-				+0.0
3,863,266	-				-1.4
3,863,302	+		PFLU_RS17030	0.15	+0.3
3,863,302	+		PFLU_RS17030	0.15	-1.8
3,863,303	-		PFLU_RS17030	0.15	+0.1
3,863,348	+		PFLU_RS17030	0.24	+0.2
3,863,422	+		PFLU_RS17030	0.38	+1.9
3,863,422	+		PFLU_RS17030	0.38	+0.0
3,863,422	+		PFLU_RS17030	0.38	-0.8
3,863,422	+		PFLU_RS17030	0.38	-2.6
3,863,423	-		PFLU_RS17030	0.38	-1.1
3,863,423	-		PFLU_RS17030	0.38	-0.6
3,863,423	-		PFLU_RS17030	0.38	-1.1
3,863,423	-		PFLU_RS17030	0.38	-1.1
3,863,423	-		PFLU_RS17030	0.38	-1.1
3,863,441	-		PFLU_RS17030	0.42	+0.2
3,863,571	-		PFLU_RS17030	0.66	+1.2
3,863,636	+		PFLU_RS17030	0.79	+0.5
3,863,746	-				-0.6
3,863,758	-				-0.4
3,863,758	-				-2.4
3,863,758	-				+4.3
3,863,758	-				+2.2
3,863,764	+				-1.6
3,863,764	+				-0.0
3,863,764	+				-2.5
3,863,765	-				+0.0
3,863,765	-				+1.4
3,863,765	-				-0.0
3,863,765	-				-2.8
3,863,765	-				+1.3
3,863,765	-				+0.5
3,863,810	-				-2.0
3,863,843	+				+0.8
3,863,843	+				-0.8
3,863,844	-				-2.0
3,863,844	-				-0.4
3,863,972	+		PFLU_RS17035	0.18	-2.8
3,863,972	+		PFLU_RS17035	0.18	-0.4
3,863,973	-		PFLU_RS17035	0.18	+1.7
3,863,973	-		PFLU_RS17035	0.18	+0.7
3,864,308	+		PFLU_RS17035	0.53	+1.4
3,864,308	+		PFLU_RS17035	0.53	+0.3
3,864,309	-		PFLU_RS17035	0.53	+0.9
3,864,309	-		PFLU_RS17035	0.53	-2.5
3,864,309	-		PFLU_RS17035	0.53	-1.6
3,864,309	-		PFLU_RS17035	0.53	-0.4
3,864,309	-		PFLU_RS17035	0.53	+1.7
3,864,342	-		PFLU_RS17035	0.57	+0.1
3,864,342	-		PFLU_RS17035	0.57	-2.6
3,864,342	-		PFLU_RS17035	0.57	-1.4
3,864,342	-		PFLU_RS17035	0.57	-1.1
3,864,342	-		PFLU_RS17035	0.57	-3.0
3,864,347	+		PFLU_RS17035	0.57	+1.0
3,864,347	+		PFLU_RS17035	0.57	+0.8
3,864,347	+		PFLU_RS17035	0.57	+2.0
3,864,347	+		PFLU_RS17035	0.57	+0.5
3,864,347	+		PFLU_RS17035	0.57	-0.5
3,864,348	-		PFLU_RS17035	0.57	-1.3
3,864,348	-		PFLU_RS17035	0.57	+1.7
3,864,348	-		PFLU_RS17035	0.57	-0.7
3,864,348	-		PFLU_RS17035	0.57	-1.1
3,864,470	+		PFLU_RS17035	0.70	-1.6
3,864,471	-		PFLU_RS17035	0.70	-0.4
3,864,471	-		PFLU_RS17035	0.70	+2.6
3,864,471	-		PFLU_RS17035	0.70	-3.2
3,864,613	+		PFLU_RS17035	0.85	+0.2
3,864,614	-		PFLU_RS17035	0.85	+0.5
3,864,614	-		PFLU_RS17035	0.85	-2.3
3,864,694	-				-0.8
3,864,694	-				-0.2
3,864,748	+				+2.9
3,864,748	+				+1.5
3,864,748	+				-0.4
3,864,749	-				-0.9
3,864,749	-				-3.2
3,864,749	-				+0.2
3,864,788	+				+1.0
3,864,793	+				-1.6
3,864,793	+				-1.1
3,864,793	+				-2.5
3,864,793	+				+0.5
3,864,793	+				-0.8
3,864,793	+				-1.6
3,864,793	+				+1.0
3,864,793	+				-1.4
3,864,793	+				-1.8
3,864,793	+				-2.1
3,864,794	-				-2.4
3,864,794	-				+0.2
3,864,794	-				-0.2
3,864,794	-				-3.5
3,864,794	-				-0.4
3,864,794	-				-0.4
3,864,794	-				+0.2
3,864,794	-				-1.8
3,864,794	-				-0.4
3,864,794	-				-0.4
3,864,794	-				-2.6
3,864,794	-				-1.1
3,864,794	-				-2.0
3,864,796	+				-2.8
3,864,797	-				+1.0
3,864,797	-				+1.2
3,864,797	-				-0.6
3,864,797	-				-2.5
3,864,797	-				+0.1
3,864,797	-				-0.5
3,864,848	-				-0.6
3,864,861	+				+0.8
3,864,862	-				-2.4
3,864,867	-				+0.3
3,864,867	-				-0.8
3,864,879	+				+3.3
3,864,879	+				-1.1
3,864,879	+				+2.2
3,864,954	-				+0.2
3,865,031	+		PFLU_RS17040	0.14	-1.3
3,865,031	+		PFLU_RS17040	0.14	-0.4
3,865,031	+		PFLU_RS17040	0.14	-1.1
3,865,032	-		PFLU_RS17040	0.14	+1.2
3,865,122	-		PFLU_RS17040	0.22	+1.4
3,865,172	+		PFLU_RS17040	0.27	-2.4
3,865,172	+		PFLU_RS17040	0.27	+1.2
3,865,172	+		PFLU_RS17040	0.27	+1.2
3,865,172	+		PFLU_RS17040	0.27	+0.8
3,865,173	-		PFLU_RS17040	0.27	+0.8
3,865,173	-		PFLU_RS17040	0.27	-2.8
3,865,173	-		PFLU_RS17040	0.27	-0.4
3,865,173	-		PFLU_RS17040	0.27	+0.6
3,865,173	-		PFLU_RS17040	0.27	-1.3
3,865,173	-		PFLU_RS17040	0.27	-2.8
3,865,173	-		PFLU_RS17040	0.27	-1.8
3,865,173	-		PFLU_RS17040	0.27	+1.8
3,865,173	-		PFLU_RS17040	0.27	-1.1
3,865,173	-		PFLU_RS17040	0.27	-1.4
3,865,173	-		PFLU_RS17040	0.27	-1.8
3,865,214	+		PFLU_RS17040	0.31	-1.8
3,865,214	+		PFLU_RS17040	0.31	-3.5
3,865,214	+		PFLU_RS17040	0.31	+1.2
3,865,214	+		PFLU_RS17040	0.31	+0.7
3,865,214	+		PFLU_RS17040	0.31	-0.7
3,865,214	+		PFLU_RS17040	0.31	-1.1
3,865,214	+		PFLU_RS17040	0.31	+0.2
3,865,214	+		PFLU_RS17040	0.31	-2.4
3,865,215	-		PFLU_RS17040	0.31	+1.4
3,865,215	-		PFLU_RS17040	0.31	+0.6
3,865,215	-		PFLU_RS17040	0.31	-0.8
3,865,215	-		PFLU_RS17040	0.31	+0.2
3,865,215	-		PFLU_RS17040	0.31	-0.4
3,865,215	-		PFLU_RS17040	0.31	-1.6
3,865,215	-		PFLU_RS17040	0.31	-2.3
3,865,215	-		PFLU_RS17040	0.31	-2.1
3,865,318	+		PFLU_RS17040	0.41	+0.2
3,865,318	+		PFLU_RS17040	0.41	-1.1
3,865,319	-		PFLU_RS17040	0.41	-2.5
3,865,319	-		PFLU_RS17040	0.41	-1.6
3,865,388	+		PFLU_RS17040	0.47	+1.4
3,865,389	-		PFLU_RS17040	0.47	+2.6
3,865,389	-		PFLU_RS17040	0.47	-3.2
3,865,389	-		PFLU_RS17040	0.47	+1.0
3,865,532	+		PFLU_RS17040	0.61	+1.5
3,865,533	-		PFLU_RS17040	0.61	-2.4
3,865,649	+		PFLU_RS17040	0.72	+1.2
3,865,649	+		PFLU_RS17040	0.72	-0.8
3,865,745	+		PFLU_RS17040	0.81	-1.1
3,865,746	-		PFLU_RS17040	0.81	-2.6
3,865,746	-		PFLU_RS17040	0.81	-1.1
3,865,748	+		PFLU_RS17040	0.81	-0.8
3,865,748	+		PFLU_RS17040	0.81	+1.2
3,865,748	+		PFLU_RS17040	0.81	-0.8
3,865,749	-		PFLU_RS17040	0.81	+0.9
3,865,749	-		PFLU_RS17040	0.81	+0.7
3,865,749	-		PFLU_RS17040	0.81	-1.1
3,865,749	-		PFLU_RS17040	0.81	-0.3