Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS09010

Experiment: H2 N-free with 2mM Adenosine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	H2 N-free with 2mM Adenosine
1,661,824	+		MMJJ_RS09005	0.56	+0.2
1,661,824	+		MMJJ_RS09005	0.56	+0.7
1,661,902	-		MMJJ_RS09005	0.60	+0.9
1,661,902	-		MMJJ_RS09005	0.60	+0.5
1,661,903	+		MMJJ_RS09005	0.60	-0.7
1,661,911	-		MMJJ_RS09005	0.60	-0.1
1,661,998	-		MMJJ_RS09005	0.65	-0.7
1,661,998	-		MMJJ_RS09005	0.65	+0.9
1,661,999	+		MMJJ_RS09005	0.65	+1.5
1,662,054	+		MMJJ_RS09005	0.68	-0.3
1,662,056	-		MMJJ_RS09005	0.68	-0.1
1,662,068	-		MMJJ_RS09005	0.69	-0.9
1,662,095	+		MMJJ_RS09005	0.70	+0.7
1,662,095	+		MMJJ_RS09005	0.70	+0.5
1,662,095	+		MMJJ_RS09005	0.70	-0.6
1,662,095	+		MMJJ_RS09005	0.70	-3.0
1,662,126	+		MMJJ_RS09005	0.72	+0.1
1,662,126	+		MMJJ_RS09005	0.72	-2.2
1,662,126	+		MMJJ_RS09005	0.72	+0.2
1,662,128	-		MMJJ_RS09005	0.72	+1.6
1,662,129	+		MMJJ_RS09005	0.72	+0.1
1,662,199	-		MMJJ_RS09005	0.75	+0.5
1,662,199	-		MMJJ_RS09005	0.75	+1.9
1,662,199	-		MMJJ_RS09005	0.75	+0.4
1,662,201	-		MMJJ_RS09005	0.75	+1.2
1,662,202	+		MMJJ_RS09005	0.75	-0.5
1,662,204	-		MMJJ_RS09005	0.76	-0.3
1,662,234	+		MMJJ_RS09005	0.77	-1.6
1,662,245	-		MMJJ_RS09005	0.78	-1.8
1,662,245	-		MMJJ_RS09005	0.78	-0.1
1,662,246	+		MMJJ_RS09005	0.78	+2.1
1,662,286	+		MMJJ_RS09005	0.80	+0.6
1,662,286	+		MMJJ_RS09005	0.80	-1.5
1,662,286	+		MMJJ_RS09005	0.80	+0.8
1,662,286	+		MMJJ_RS09005	0.80	+0.4
1,662,346	-		MMJJ_RS09005	0.83	-1.1
1,662,346	-		MMJJ_RS09005	0.83	+1.4
1,662,348	-		MMJJ_RS09005	0.83	-1.5
1,662,348	-		MMJJ_RS09005	0.83	+0.8
1,662,348	-		MMJJ_RS09005	0.83	+0.2
1,662,349	+		MMJJ_RS09005	0.83	+1.7
1,662,379	+		MMJJ_RS09005	0.85	+1.6
1,662,430	-		MMJJ_RS09005	0.87	-0.3
1,662,430	-		MMJJ_RS09005	0.87	-1.9
1,662,430	-		MMJJ_RS09005	0.87	+5.8
1,662,445	-		MMJJ_RS09005	0.88	+3.9
1,662,445	-		MMJJ_RS09005	0.88	-1.0
1,662,446	+		MMJJ_RS09005	0.88	-0.0
1,662,449	-		MMJJ_RS09005	0.88	-0.9
1,662,449	-		MMJJ_RS09005	0.88	+0.1
1,662,450	+		MMJJ_RS09005	0.88	-0.2
1,662,455	-		MMJJ_RS09005	0.89	+0.4
1,662,456	+		MMJJ_RS09005	0.89	-0.5
1,662,456	+		MMJJ_RS09005	0.89	+0.2
1,662,456	+		MMJJ_RS09005	0.89	+0.5
1,662,456	+		MMJJ_RS09005	0.89	-0.5
1,662,456	+		MMJJ_RS09005	0.89	-1.6
1,662,457	-		MMJJ_RS09005	0.89	+0.6
1,662,457	-		MMJJ_RS09005	0.89	+1.4
1,662,457	-		MMJJ_RS09005	0.89	+0.1
1,662,457	-		MMJJ_RS09005	0.89	+1.4
1,662,458	+		MMJJ_RS09005	0.89	+0.3
1,662,458	+		MMJJ_RS09005	0.89	-1.0
1,662,458	+		MMJJ_RS09005	0.89	+0.6
1,662,463	-		MMJJ_RS09005	0.89	-1.3
1,662,464	+		MMJJ_RS09005	0.89	+0.8
1,662,509	-				+0.3
1,662,510	+				-0.3
1,662,510	+				+0.0
1,662,510	+				+0.4
1,662,520	+				+0.4
1,662,520	+				+1.8
1,662,520	+				+0.7
1,662,697	+				+0.4
1,662,699	-				+1.9
1,662,699	-				+1.6
1,662,700	+				+2.3
1,662,727	+				-1.4
1,662,728	-				+1.8
1,662,728	-				-0.7
1,662,728	-				-0.3
1,662,787	+				+0.6
1,662,828	-				+9.0
1,662,828	-				+0.4
1,662,828	-				-0.4
1,662,829	+				-0.4
1,662,829	+				+0.5
1,662,834	+				-1.9
1,662,849	-				+0.6
1,662,850	+				-1.7
1,662,895	-		MMJJ_RS09010	0.15	+0.4
1,662,895	-		MMJJ_RS09010	0.15	-1.9
1,662,895	-		MMJJ_RS09010	0.15	-0.9
1,662,933	-		MMJJ_RS09010	0.23	-1.9
1,662,994	-		MMJJ_RS09010	0.36	-1.0
1,662,995	+		MMJJ_RS09010	0.36	-1.4
1,663,055	+		MMJJ_RS09010	0.48	+0.8
1,663,055	+		MMJJ_RS09010	0.48	-1.9
1,663,139	+		MMJJ_RS09010	0.66	-0.3
1,663,235	-		MMJJ_RS09010	0.86	-0.9
1,663,242	-		MMJJ_RS09010	0.87	-1.4
1,663,255	-				+1.4
1,663,255	-				-0.5
1,663,255	-				+0.5
1,663,255	-				+0.6
1,663,255	-				-0.3
1,663,255	-				-0.0
1,663,256	+				+0.4
1,663,256	+				+1.2
1,663,256	+				+0.3
1,663,259	-				-0.7
1,663,259	-				-0.4
1,663,271	+				-1.9
1,663,294	-				+0.8
1,663,294	-				+0.8
1,663,294	-				+0.2
1,663,302	-				-1.1
1,663,304	-				-0.0
1,663,329	+				+2.3
1,663,378	+				+1.2
1,663,464	-		MMJJ_RS09015	0.10	-0.7
1,663,683	+		MMJJ_RS09015	0.38	-1.7
1,663,767	-		MMJJ_RS09015	0.48	+1.8
1,663,819	+		MMJJ_RS09015	0.54	-0.2
1,663,830	-		MMJJ_RS09015	0.56	-2.7
1,663,860	-		MMJJ_RS09015	0.59	-0.5
1,663,862	-		MMJJ_RS09015	0.60	-0.6
1,663,863	+		MMJJ_RS09015	0.60	+1.9
1,663,906	+		MMJJ_RS09015	0.65	+0.4
1,663,925	+		MMJJ_RS09015	0.68	-1.2
1,663,964	-		MMJJ_RS09015	0.72	+0.4
1,663,993	+		MMJJ_RS09015	0.76	-0.7
1,663,998	+		MMJJ_RS09015	0.77	+1.2
1,664,004	-		MMJJ_RS09015	0.77	+0.4
1,664,004	-		MMJJ_RS09015	0.77	-0.3
1,664,004	-		MMJJ_RS09015	0.77	-0.5
1,664,004	-		MMJJ_RS09015	0.77	-0.4
1,664,004	-		MMJJ_RS09015	0.77	+0.6
1,664,004	-		MMJJ_RS09015	0.77	-1.0
1,664,005	+		MMJJ_RS09015	0.77	+2.3
1,664,005	+		MMJJ_RS09015	0.77	+1.1
1,664,005	+		MMJJ_RS09015	0.77	+0.5
1,664,010	-		MMJJ_RS09015	0.78	+1.1
1,664,010	-		MMJJ_RS09015	0.78	+0.6
1,664,010	-		MMJJ_RS09015	0.78	-0.2
1,664,016	-		MMJJ_RS09015	0.79	-2.1
1,664,016	-		MMJJ_RS09015	0.79	-0.7
1,664,016	-		MMJJ_RS09015	0.79	-0.4
1,664,022	-		MMJJ_RS09015	0.80	+0.6
1,664,023	+		MMJJ_RS09015	0.80	+0.4
1,664,040	-		MMJJ_RS09015	0.82	-0.4
1,664,040	-		MMJJ_RS09015	0.82	-2.1
1,664,049	+		MMJJ_RS09015	0.83	+0.0
1,664,091	-		MMJJ_RS09015	0.88	+1.4
1,664,093	-		MMJJ_RS09015	0.88	+0.4
1,664,093	-		MMJJ_RS09015	0.88	+0.0
1,664,094	+		MMJJ_RS09015	0.88	-0.6
1,664,133	-				-1.5
1,664,134	+				-0.7
1,664,136	-				-0.8
1,664,136	-				-2.3
1,664,136	-				+0.3
1,664,137	+				-0.3
1,664,139	-				-1.1
1,664,142	-				-0.7
1,664,143	+				+1.2
1,664,155	+				+2.1
1,664,156	-				-1.3
1,664,157	+				-0.4
1,664,171	-				-1.9
1,664,186	-				+1.1
1,664,186	-				+1.2
1,664,187	+				+1.3
1,664,187	+				-0.3
1,664,198	-				+0.3
1,664,211	-				-0.6
1,664,218	-				-0.9
1,664,219	+				-0.5
1,664,219	+				-0.7
1,664,219	+				+0.2
1,664,220	-				-3.1
1,664,221	+				-0.4
1,664,232	-				-3.0
1,664,232	-				-0.2
1,664,248	+				+0.8
1,664,254	+				-0.1
1,664,254	+				-1.0
1,664,265	+		MMJJ_RS09020	0.10	+0.1
1,664,268	-		MMJJ_RS09020	0.11	-0.1
1,664,269	+		MMJJ_RS09020	0.11	+0.7