Experiment: H2 N-free with 2mM Adenosine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS08590 and MMJJ_RS08595 are separated by 13 nucleotides MMJJ_RS08595 and MMJJ_RS08600 are separated by 56 nucleotides MMJJ_RS08600 and MMJJ_RS08605 are separated by 59 nucleotides MMJJ_RS08605 and MMJJ_RS08610 are separated by 4 nucleotides
MMJJ_RS08590: MMJJ_RS08590 - transketolase, at 1,582,057 to 1,582,908
_RS08590
MMJJ_RS08595: MMJJ_RS08595 - ribulose-phosphate 3-epimerase, at 1,582,922 to 1,583,581
_RS08595
MMJJ_RS08600: MMJJ_RS08600 - transketolase family protein, at 1,583,638 to 1,584,576
_RS08600
MMJJ_RS08605: MMJJ_RS08605 - hypothetical protein, at 1,584,636 to 1,585,391
_RS08605
MMJJ_RS08610: MMJJ_RS08610 - oligosaccharide repeat unit polymerase family protein, at 1,585,396 to 1,586,469
_RS08610
Position (kb) 1583
1584
1585 Strain fitness (log2 ratio) -1
0
1
2
3 at 1583.308 kb on + strand, within MMJJ_RS08595 at 1583.436 kb on - strand, within MMJJ_RS08595 at 1583.592 kb on + strand at 1583.598 kb on + strand at 1583.605 kb on + strand at 1583.620 kb on + strand at 1584.369 kb on + strand, within MMJJ_RS08600 at 1584.599 kb on - strand at 1584.604 kb on + strand at 1584.604 kb on + strand at 1584.976 kb on + strand, within MMJJ_RS08605 at 1585.005 kb on + strand, within MMJJ_RS08605 at 1585.009 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction H2 N-free with 2mM Adenosine remove 1,583,308 + MMJJ_RS08595 0.58 +0.9 1,583,436 - MMJJ_RS08595 0.78 +1.2 1,583,592 + -0.5 1,583,598 + -1.7 1,583,605 + +2.9 1,583,620 + +0.9 1,584,369 + MMJJ_RS08600 0.78 +0.6 1,584,599 - +0.6 1,584,604 + +1.3 1,584,604 + -0.9 1,584,976 + MMJJ_RS08605 0.45 +0.6 1,585,005 + MMJJ_RS08605 0.49 +0.4 1,585,009 + +2.9
Or see this region's nucleotide sequence