Experiment: H2 N-free with 2mM Adenosine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS07815 and MMJJ_RS07820 are separated by 82 nucleotides MMJJ_RS07820 and MMJJ_RS07825 are separated by 39 nucleotides MMJJ_RS07825 and MMJJ_RS07830 are separated by 17 nucleotides
MMJJ_RS07815: MMJJ_RS07815 - 2-oxoacid:acceptor oxidoreductase family protein, at 1,431,281 to 1,432,720
_RS07815
MMJJ_RS07820: MMJJ_RS07820 - bifunctional hexulose-6-phosphate synthase/ribonuclease regulator, at 1,432,803 to 1,434,119
_RS07820
MMJJ_RS07825: MMJJ_RS07825 - YciI family protein, at 1,434,159 to 1,434,449
_RS07825
MMJJ_RS07830: MMJJ_RS07830 - DUF1786 domain-containing protein, at 1,434,467 to 1,435,483
_RS07830
Position (kb) 1432
1433
1434
1435 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8
9
10
11 at 1431.834 kb on - strand, within MMJJ_RS07815 at 1431.835 kb on + strand, within MMJJ_RS07815 at 1431.839 kb on + strand, within MMJJ_RS07815 at 1431.873 kb on - strand, within MMJJ_RS07815 at 1431.873 kb on - strand, within MMJJ_RS07815 at 1431.873 kb on - strand, within MMJJ_RS07815 at 1431.874 kb on + strand, within MMJJ_RS07815 at 1431.874 kb on + strand, within MMJJ_RS07815 at 1431.874 kb on + strand, within MMJJ_RS07815 at 1431.874 kb on + strand, within MMJJ_RS07815 at 1431.949 kb on + strand at 1431.973 kb on + strand, within MMJJ_RS07815 at 1432.114 kb on - strand, within MMJJ_RS07815 at 1432.114 kb on - strand, within MMJJ_RS07815 at 1432.115 kb on + strand, within MMJJ_RS07815 at 1432.117 kb on - strand, within MMJJ_RS07815 at 1432.117 kb on - strand, within MMJJ_RS07815 at 1432.117 kb on - strand, within MMJJ_RS07815 at 1432.118 kb on + strand, within MMJJ_RS07815 at 1432.119 kb on - strand, within MMJJ_RS07815 at 1432.119 kb on - strand, within MMJJ_RS07815 at 1432.120 kb on + strand, within MMJJ_RS07815 at 1432.120 kb on + strand, within MMJJ_RS07815 at 1432.120 kb on + strand, within MMJJ_RS07815 at 1432.120 kb on + strand, within MMJJ_RS07815 at 1432.120 kb on + strand, within MMJJ_RS07815 at 1432.120 kb on + strand, within MMJJ_RS07815 at 1432.120 kb on + strand, within MMJJ_RS07815 at 1432.120 kb on + strand, within MMJJ_RS07815 at 1432.120 kb on + strand, within MMJJ_RS07815 at 1432.120 kb on + strand, within MMJJ_RS07815 at 1432.128 kb on - strand, within MMJJ_RS07815 at 1432.129 kb on + strand, within MMJJ_RS07815 at 1432.185 kb on - strand, within MMJJ_RS07815 at 1432.252 kb on - strand, within MMJJ_RS07815 at 1432.253 kb on + strand, within MMJJ_RS07815 at 1432.266 kb on + strand, within MMJJ_RS07815 at 1432.365 kb on + strand, within MMJJ_RS07815 at 1432.394 kb on + strand, within MMJJ_RS07815 at 1432.623 kb on - strand at 1432.677 kb on - strand at 1432.723 kb on + strand at 1432.760 kb on - strand at 1432.765 kb on + strand at 1432.904 kb on - strand at 1432.968 kb on + strand, within MMJJ_RS07820 at 1433.066 kb on - strand, within MMJJ_RS07820 at 1433.067 kb on + strand, within MMJJ_RS07820 at 1433.068 kb on - strand, within MMJJ_RS07820 at 1433.068 kb on - strand, within MMJJ_RS07820 at 1433.068 kb on - strand, within MMJJ_RS07820 at 1433.069 kb on + strand, within MMJJ_RS07820 at 1433.069 kb on + strand, within MMJJ_RS07820 at 1433.101 kb on - strand, within MMJJ_RS07820 at 1433.104 kb on - strand, within MMJJ_RS07820 at 1433.104 kb on - strand, within MMJJ_RS07820 at 1433.104 kb on - strand, within MMJJ_RS07820 at 1433.105 kb on + strand, within MMJJ_RS07820 at 1433.105 kb on + strand, within MMJJ_RS07820 at 1433.105 kb on + strand, within MMJJ_RS07820 at 1433.105 kb on + strand, within MMJJ_RS07820 at 1433.113 kb on - strand, within MMJJ_RS07820 at 1433.114 kb on + strand, within MMJJ_RS07820 at 1433.140 kb on - strand, within MMJJ_RS07820 at 1433.140 kb on - strand, within MMJJ_RS07820 at 1433.209 kb on - strand, within MMJJ_RS07820 at 1433.209 kb on - strand, within MMJJ_RS07820 at 1433.210 kb on + strand, within MMJJ_RS07820 at 1433.210 kb on + strand, within MMJJ_RS07820 at 1433.210 kb on + strand, within MMJJ_RS07820 at 1433.213 kb on - strand, within MMJJ_RS07820 at 1433.218 kb on - strand, within MMJJ_RS07820 at 1433.219 kb on + strand, within MMJJ_RS07820 at 1433.219 kb on + strand, within MMJJ_RS07820 at 1433.219 kb on + strand, within MMJJ_RS07820 at 1433.223 kb on + strand, within MMJJ_RS07820 at 1433.251 kb on - strand, within MMJJ_RS07820 at 1433.276 kb on + strand, within MMJJ_RS07820 at 1433.298 kb on + strand, within MMJJ_RS07820 at 1433.375 kb on + strand, within MMJJ_RS07820 at 1433.400 kb on + strand, within MMJJ_RS07820 at 1433.400 kb on + strand, within MMJJ_RS07820 at 1433.432 kb on - strand, within MMJJ_RS07820 at 1433.437 kb on - strand, within MMJJ_RS07820 at 1433.438 kb on + strand, within MMJJ_RS07820 at 1433.525 kb on + strand, within MMJJ_RS07820 at 1433.539 kb on - strand, within MMJJ_RS07820 at 1433.556 kb on + strand, within MMJJ_RS07820 at 1433.636 kb on - strand, within MMJJ_RS07820 at 1433.643 kb on - strand, within MMJJ_RS07820 at 1433.669 kb on + strand, within MMJJ_RS07820 at 1433.669 kb on + strand, within MMJJ_RS07820 at 1433.704 kb on - strand, within MMJJ_RS07820 at 1433.704 kb on - strand, within MMJJ_RS07820 at 1433.705 kb on + strand, within MMJJ_RS07820 at 1433.705 kb on + strand, within MMJJ_RS07820 at 1433.708 kb on + strand, within MMJJ_RS07820 at 1433.708 kb on + strand, within MMJJ_RS07820 at 1433.792 kb on + strand, within MMJJ_RS07820 at 1433.792 kb on + strand, within MMJJ_RS07820 at 1433.792 kb on + strand, within MMJJ_RS07820 at 1433.794 kb on - strand, within MMJJ_RS07820 at 1433.794 kb on - strand, within MMJJ_RS07820 at 1433.795 kb on + strand, within MMJJ_RS07820 at 1433.795 kb on + strand, within MMJJ_RS07820 at 1433.858 kb on - strand, within MMJJ_RS07820 at 1433.859 kb on + strand, within MMJJ_RS07820 at 1433.859 kb on + strand, within MMJJ_RS07820 at 1433.859 kb on + strand, within MMJJ_RS07820 at 1433.859 kb on + strand, within MMJJ_RS07820 at 1433.861 kb on + strand, within MMJJ_RS07820 at 1433.899 kb on - strand, within MMJJ_RS07820 at 1433.900 kb on + strand, within MMJJ_RS07820 at 1433.972 kb on - strand, within MMJJ_RS07820 at 1433.977 kb on - strand, within MMJJ_RS07820 at 1434.041 kb on - strand at 1434.042 kb on + strand at 1434.130 kb on - strand at 1434.131 kb on + strand at 1434.229 kb on - strand, within MMJJ_RS07825 at 1434.244 kb on - strand, within MMJJ_RS07825 at 1434.262 kb on + strand, within MMJJ_RS07825 at 1434.291 kb on + strand, within MMJJ_RS07825 at 1434.342 kb on - strand, within MMJJ_RS07825 at 1434.342 kb on - strand, within MMJJ_RS07825 at 1434.362 kb on + strand, within MMJJ_RS07825 at 1434.362 kb on + strand, within MMJJ_RS07825 at 1434.383 kb on - strand, within MMJJ_RS07825 at 1434.384 kb on + strand, within MMJJ_RS07825 at 1434.441 kb on - strand at 1434.442 kb on + strand at 1434.442 kb on + strand at 1434.443 kb on - strand at 1434.443 kb on - strand at 1434.444 kb on + strand at 1434.444 kb on + strand at 1434.497 kb on - strand at 1434.498 kb on + strand at 1434.524 kb on - strand at 1434.547 kb on + strand at 1434.614 kb on + strand, within MMJJ_RS07830 at 1434.647 kb on + strand, within MMJJ_RS07830 at 1434.647 kb on + strand, within MMJJ_RS07830 at 1434.648 kb on - strand, within MMJJ_RS07830 at 1434.648 kb on - strand, within MMJJ_RS07830 at 1434.648 kb on - strand, within MMJJ_RS07830 at 1434.649 kb on + strand, within MMJJ_RS07830 at 1434.649 kb on + strand, within MMJJ_RS07830 at 1434.650 kb on - strand, within MMJJ_RS07830 at 1434.650 kb on - strand, within MMJJ_RS07830 at 1434.650 kb on - strand, within MMJJ_RS07830 at 1434.651 kb on + strand, within MMJJ_RS07830 at 1434.651 kb on + strand, within MMJJ_RS07830 at 1434.651 kb on + strand, within MMJJ_RS07830 at 1434.651 kb on + strand, within MMJJ_RS07830 at 1434.651 kb on + strand, within MMJJ_RS07830 at 1434.651 kb on + strand, within MMJJ_RS07830 at 1434.651 kb on + strand, within MMJJ_RS07830 at 1434.653 kb on + strand, within MMJJ_RS07830 at 1434.701 kb on - strand, within MMJJ_RS07830 at 1434.781 kb on - strand, within MMJJ_RS07830 at 1434.781 kb on - strand, within MMJJ_RS07830 at 1434.843 kb on + strand, within MMJJ_RS07830 at 1434.892 kb on + strand, within MMJJ_RS07830 at 1434.896 kb on + strand, within MMJJ_RS07830 at 1434.914 kb on - strand, within MMJJ_RS07830 at 1434.958 kb on - strand, within MMJJ_RS07830 at 1434.958 kb on - strand, within MMJJ_RS07830 at 1434.958 kb on - strand, within MMJJ_RS07830 at 1435.019 kb on + strand, within MMJJ_RS07830 at 1435.073 kb on - strand, within MMJJ_RS07830 at 1435.073 kb on - strand, within MMJJ_RS07830 at 1435.074 kb on + strand, within MMJJ_RS07830 at 1435.074 kb on + strand, within MMJJ_RS07830
Per-strain Table
Position Strand Gene LocusTag Fraction H2 N-free with 2mM Adenosine remove 1,431,834 - MMJJ_RS07815 0.38 +0.1 1,431,835 + MMJJ_RS07815 0.38 -0.2 1,431,839 + MMJJ_RS07815 0.39 +0.6 1,431,873 - MMJJ_RS07815 0.41 -0.6 1,431,873 - MMJJ_RS07815 0.41 -1.1 1,431,873 - MMJJ_RS07815 0.41 +1.1 1,431,874 + MMJJ_RS07815 0.41 +0.4 1,431,874 + MMJJ_RS07815 0.41 +1.4 1,431,874 + MMJJ_RS07815 0.41 -0.9 1,431,874 + MMJJ_RS07815 0.41 +0.2 1,431,949 + +1.1 1,431,973 + MMJJ_RS07815 0.48 +1.0 1,432,114 - MMJJ_RS07815 0.58 +1.3 1,432,114 - MMJJ_RS07815 0.58 -0.9 1,432,115 + MMJJ_RS07815 0.58 -1.6 1,432,117 - MMJJ_RS07815 0.58 +1.5 1,432,117 - MMJJ_RS07815 0.58 +1.6 1,432,117 - MMJJ_RS07815 0.58 +2.3 1,432,118 + MMJJ_RS07815 0.58 +1.5 1,432,119 - MMJJ_RS07815 0.58 +1.2 1,432,119 - MMJJ_RS07815 0.58 +1.7 1,432,120 + MMJJ_RS07815 0.58 +1.0 1,432,120 + MMJJ_RS07815 0.58 -1.4 1,432,120 + MMJJ_RS07815 0.58 -0.1 1,432,120 + MMJJ_RS07815 0.58 +1.4 1,432,120 + MMJJ_RS07815 0.58 +1.3 1,432,120 + MMJJ_RS07815 0.58 +1.2 1,432,120 + MMJJ_RS07815 0.58 -1.9 1,432,120 + MMJJ_RS07815 0.58 +1.5 1,432,120 + MMJJ_RS07815 0.58 +1.4 1,432,120 + MMJJ_RS07815 0.58 +1.8 1,432,128 - MMJJ_RS07815 0.59 -1.1 1,432,129 + MMJJ_RS07815 0.59 +2.0 1,432,185 - MMJJ_RS07815 0.63 +1.6 1,432,252 - MMJJ_RS07815 0.67 +2.4 1,432,253 + MMJJ_RS07815 0.68 +8.7 1,432,266 + MMJJ_RS07815 0.68 +0.6 1,432,365 + MMJJ_RS07815 0.75 -1.7 1,432,394 + MMJJ_RS07815 0.77 +0.6 1,432,623 - +2.1 1,432,677 - +0.3 1,432,723 + -0.4 1,432,760 - -0.4 1,432,765 + +1.3 1,432,904 - +0.9 1,432,968 + MMJJ_RS07820 0.13 -0.3 1,433,066 - MMJJ_RS07820 0.20 +1.9 1,433,067 + MMJJ_RS07820 0.20 +1.9 1,433,068 - MMJJ_RS07820 0.20 +2.2 1,433,068 - MMJJ_RS07820 0.20 +1.6 1,433,068 - MMJJ_RS07820 0.20 +1.6 1,433,069 + MMJJ_RS07820 0.20 +1.5 1,433,069 + MMJJ_RS07820 0.20 -0.4 1,433,101 - MMJJ_RS07820 0.23 +0.7 1,433,104 - MMJJ_RS07820 0.23 +2.3 1,433,104 - MMJJ_RS07820 0.23 +0.5 1,433,104 - MMJJ_RS07820 0.23 +2.8 1,433,105 + MMJJ_RS07820 0.23 +0.6 1,433,105 + MMJJ_RS07820 0.23 +0.6 1,433,105 + MMJJ_RS07820 0.23 -0.0 1,433,105 + MMJJ_RS07820 0.23 +1.0 1,433,113 - MMJJ_RS07820 0.24 +0.1 1,433,114 + MMJJ_RS07820 0.24 +1.5 1,433,140 - MMJJ_RS07820 0.26 +1.0 1,433,140 - MMJJ_RS07820 0.26 -2.6 1,433,209 - MMJJ_RS07820 0.31 +0.8 1,433,209 - MMJJ_RS07820 0.31 +0.1 1,433,210 + MMJJ_RS07820 0.31 +0.6 1,433,210 + MMJJ_RS07820 0.31 +0.8 1,433,210 + MMJJ_RS07820 0.31 +1.2 1,433,213 - MMJJ_RS07820 0.31 +0.2 1,433,218 - MMJJ_RS07820 0.32 +2.4 1,433,219 + MMJJ_RS07820 0.32 -0.5 1,433,219 + MMJJ_RS07820 0.32 +0.8 1,433,219 + MMJJ_RS07820 0.32 +0.1 1,433,223 + MMJJ_RS07820 0.32 +1.6 1,433,251 - MMJJ_RS07820 0.34 +2.1 1,433,276 + MMJJ_RS07820 0.36 -0.8 1,433,298 + MMJJ_RS07820 0.38 +1.4 1,433,375 + MMJJ_RS07820 0.43 +1.7 1,433,400 + MMJJ_RS07820 0.45 -0.1 1,433,400 + MMJJ_RS07820 0.45 +0.5 1,433,432 - MMJJ_RS07820 0.48 +2.4 1,433,437 - MMJJ_RS07820 0.48 +2.7 1,433,438 + MMJJ_RS07820 0.48 +2.2 1,433,525 + MMJJ_RS07820 0.55 -0.4 1,433,539 - MMJJ_RS07820 0.56 -0.3 1,433,556 + MMJJ_RS07820 0.57 +3.2 1,433,636 - MMJJ_RS07820 0.63 +1.7 1,433,643 - MMJJ_RS07820 0.64 -0.5 1,433,669 + MMJJ_RS07820 0.66 +1.6 1,433,669 + MMJJ_RS07820 0.66 -0.1 1,433,704 - MMJJ_RS07820 0.68 -1.3 1,433,704 - MMJJ_RS07820 0.68 +0.3 1,433,705 + MMJJ_RS07820 0.68 +0.1 1,433,705 + MMJJ_RS07820 0.68 +2.2 1,433,708 + MMJJ_RS07820 0.69 +1.7 1,433,708 + MMJJ_RS07820 0.69 +0.8 1,433,792 + MMJJ_RS07820 0.75 +1.3 1,433,792 + MMJJ_RS07820 0.75 +1.4 1,433,792 + MMJJ_RS07820 0.75 +1.1 1,433,794 - MMJJ_RS07820 0.75 +0.5 1,433,794 - MMJJ_RS07820 0.75 +2.1 1,433,795 + MMJJ_RS07820 0.75 +1.3 1,433,795 + MMJJ_RS07820 0.75 +1.3 1,433,858 - MMJJ_RS07820 0.80 +1.0 1,433,859 + MMJJ_RS07820 0.80 +0.9 1,433,859 + MMJJ_RS07820 0.80 +1.0 1,433,859 + MMJJ_RS07820 0.80 -0.4 1,433,859 + MMJJ_RS07820 0.80 +2.3 1,433,861 + MMJJ_RS07820 0.80 +1.5 1,433,899 - MMJJ_RS07820 0.83 +1.0 1,433,900 + MMJJ_RS07820 0.83 -0.2 1,433,972 - MMJJ_RS07820 0.89 +1.4 1,433,977 - MMJJ_RS07820 0.89 +1.9 1,434,041 - -0.4 1,434,042 + +0.1 1,434,130 - +2.3 1,434,131 + -2.1 1,434,229 - MMJJ_RS07825 0.24 +1.7 1,434,244 - MMJJ_RS07825 0.29 +0.9 1,434,262 + MMJJ_RS07825 0.35 +2.3 1,434,291 + MMJJ_RS07825 0.45 -0.4 1,434,342 - MMJJ_RS07825 0.63 -0.9 1,434,342 - MMJJ_RS07825 0.63 -0.7 1,434,362 + MMJJ_RS07825 0.70 -0.2 1,434,362 + MMJJ_RS07825 0.70 -1.3 1,434,383 - MMJJ_RS07825 0.77 -2.0 1,434,384 + MMJJ_RS07825 0.77 -1.7 1,434,441 - -1.0 1,434,442 + +0.5 1,434,442 + -0.2 1,434,443 - +10.9 1,434,443 - +1.6 1,434,444 + -0.9 1,434,444 + +0.4 1,434,497 - +2.3 1,434,498 + +0.6 1,434,524 - +1.6 1,434,547 + -0.1 1,434,614 + MMJJ_RS07830 0.14 +0.2 1,434,647 + MMJJ_RS07830 0.18 -1.5 1,434,647 + MMJJ_RS07830 0.18 -0.8 1,434,648 - MMJJ_RS07830 0.18 +2.5 1,434,648 - MMJJ_RS07830 0.18 +0.1 1,434,648 - MMJJ_RS07830 0.18 +0.3 1,434,649 + MMJJ_RS07830 0.18 +0.8 1,434,649 + MMJJ_RS07830 0.18 +0.9 1,434,650 - MMJJ_RS07830 0.18 -0.1 1,434,650 - MMJJ_RS07830 0.18 -1.2 1,434,650 - MMJJ_RS07830 0.18 +1.3 1,434,651 + MMJJ_RS07830 0.18 +2.0 1,434,651 + MMJJ_RS07830 0.18 +0.9 1,434,651 + MMJJ_RS07830 0.18 -0.0 1,434,651 + MMJJ_RS07830 0.18 -0.0 1,434,651 + MMJJ_RS07830 0.18 +0.7 1,434,651 + MMJJ_RS07830 0.18 -0.3 1,434,651 + MMJJ_RS07830 0.18 +0.1 1,434,653 + MMJJ_RS07830 0.18 -1.3 1,434,701 - MMJJ_RS07830 0.23 +1.6 1,434,781 - MMJJ_RS07830 0.31 -1.4 1,434,781 - MMJJ_RS07830 0.31 -0.9 1,434,843 + MMJJ_RS07830 0.37 +1.9 1,434,892 + MMJJ_RS07830 0.42 -1.2 1,434,896 + MMJJ_RS07830 0.42 +1.5 1,434,914 - MMJJ_RS07830 0.44 +0.9 1,434,958 - MMJJ_RS07830 0.48 +1.9 1,434,958 - MMJJ_RS07830 0.48 +0.5 1,434,958 - MMJJ_RS07830 0.48 +3.9 1,435,019 + MMJJ_RS07830 0.54 -1.0 1,435,073 - MMJJ_RS07830 0.60 +0.5 1,435,073 - MMJJ_RS07830 0.60 +0.0 1,435,074 + MMJJ_RS07830 0.60 -0.1 1,435,074 + MMJJ_RS07830 0.60 +0.6
Or see this region's nucleotide sequence