Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS07485

Experiment: H2 N-free with 2mM Adenosine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	H2 N-free with 2mM Adenosine
1,375,259	-		MMJJ_RS07480	0.17	+0.3
1,375,259	-		MMJJ_RS07480	0.17	+0.6
1,375,267	+		MMJJ_RS07480	0.18	-0.6
1,375,268	-		MMJJ_RS07480	0.18	+2.0
1,375,268	-		MMJJ_RS07480	0.18	+1.1
1,375,268	-		MMJJ_RS07480	0.18	+1.9
1,375,268	-		MMJJ_RS07480	0.18	+0.7
1,375,268	-		MMJJ_RS07480	0.18	+1.1
1,375,269	+		MMJJ_RS07480	0.18	-1.9
1,375,303	+		MMJJ_RS07480	0.21	+0.2
1,375,391	+		MMJJ_RS07480	0.29	+2.1
1,375,451	-		MMJJ_RS07480	0.34	-0.4
1,375,486	-		MMJJ_RS07480	0.37	+1.0
1,375,487	+		MMJJ_RS07480	0.37	-0.9
1,375,518	+		MMJJ_RS07480	0.40	+0.1
1,375,546	-		MMJJ_RS07480	0.42	-1.4
1,375,546	-		MMJJ_RS07480	0.42	-0.4
1,375,564	+		MMJJ_RS07480	0.44	-0.2
1,375,580	-		MMJJ_RS07480	0.45	-0.9
1,375,580	-		MMJJ_RS07480	0.45	-0.5
1,375,580	-		MMJJ_RS07480	0.45	-0.5
1,375,581	+		MMJJ_RS07480	0.45	+0.3
1,375,581	+		MMJJ_RS07480	0.45	+0.9
1,375,588	-		MMJJ_RS07480	0.46	+0.9
1,375,640	+		MMJJ_RS07480	0.50	-1.1
1,375,646	-		MMJJ_RS07480	0.51	+0.5
1,375,646	-		MMJJ_RS07480	0.51	-0.8
1,375,647	+		MMJJ_RS07480	0.51	-1.6
1,375,677	-		MMJJ_RS07480	0.54	+0.2
1,375,677	-		MMJJ_RS07480	0.54	-0.1
1,375,726	+		MMJJ_RS07480	0.58	+1.6
1,375,769	+		MMJJ_RS07480	0.62	-0.1
1,375,830	-		MMJJ_RS07480	0.67	+0.8
1,375,830	-		MMJJ_RS07480	0.67	+1.3
1,375,830	-		MMJJ_RS07480	0.67	-1.4
1,375,830	-		MMJJ_RS07480	0.67	+1.6
1,375,831	+		MMJJ_RS07480	0.67	+1.2
1,375,831	+		MMJJ_RS07480	0.67	+0.6
1,375,890	-		MMJJ_RS07480	0.72	+0.5
1,375,890	-		MMJJ_RS07480	0.72	-0.6
1,375,891	+		MMJJ_RS07480	0.72	+0.2
1,375,901	-		MMJJ_RS07480	0.73	-2.4
1,375,950	-		MMJJ_RS07480	0.77	+1.2
1,375,951	+		MMJJ_RS07480	0.77	-0.2
1,375,954	+		MMJJ_RS07480	0.78	-2.2
1,375,954	+		MMJJ_RS07480	0.78	+2.4
1,375,956	+				+1.9
1,376,018	+		MMJJ_RS07480	0.83	+0.6
1,376,053	+		MMJJ_RS07480	0.86	+0.8
1,376,059	-		MMJJ_RS07480	0.87	+1.5
1,376,059	-		MMJJ_RS07480	0.87	-1.7
1,376,101	+				+0.2
1,376,134	-				+1.1
1,376,135	+				-0.1
1,376,138	-				-0.9
1,376,155	-				+0.2
1,376,210	+				-1.5
1,376,221	+				-0.9
1,376,246	-				-0.7
1,376,247	+				-0.8
1,376,247	+				-0.5
1,376,247	+				-0.7
1,376,247	+				+0.9
1,376,285	-				-1.2
1,376,286	+				-1.2
1,376,286	+				-1.7
1,376,286	+				-0.4
1,376,289	-				-0.1
1,376,290	+				-1.1
1,376,397	-		MMJJ_RS07485	0.31	-2.3
1,376,397	-		MMJJ_RS07485	0.31	-1.2
1,376,398	+		MMJJ_RS07485	0.31	-0.7
1,376,398	+		MMJJ_RS07485	0.31	-1.3
1,376,401	-		MMJJ_RS07485	0.32	-1.5
1,376,401	-		MMJJ_RS07485	0.32	-1.1
1,376,401	-		MMJJ_RS07485	0.32	-2.3
1,376,401	-		MMJJ_RS07485	0.32	-1.7
1,376,402	+		MMJJ_RS07485	0.32	+1.3
1,376,404	-		MMJJ_RS07485	0.32	-0.5
1,376,405	+		MMJJ_RS07485	0.33	-1.3
1,376,405	+		MMJJ_RS07485	0.33	-0.3
1,376,427	+		MMJJ_RS07485	0.37	-2.0
1,376,443	-		MMJJ_RS07485	0.41	+0.3
1,376,444	+		MMJJ_RS07485	0.41	-0.5
1,376,448	-		MMJJ_RS07485	0.42	+1.1
1,376,449	+		MMJJ_RS07485	0.42	-1.8
1,376,449	+		MMJJ_RS07485	0.42	+3.9
1,376,453	-		MMJJ_RS07485	0.43	-1.1
1,376,454	+		MMJJ_RS07485	0.43	-0.9
1,376,455	-		MMJJ_RS07485	0.43	+0.9
1,376,480	+		MMJJ_RS07485	0.49	+0.3
1,376,486	+		MMJJ_RS07485	0.50	-1.4
1,376,534	-		MMJJ_RS07485	0.60	+1.6
1,376,559	+		MMJJ_RS07485	0.65	+0.9
1,376,652	+		MMJJ_RS07485	0.85	-1.2
1,376,665	-		MMJJ_RS07485	0.88	-1.5
1,376,665	-		MMJJ_RS07485	0.88	+0.1
1,376,684	+				-0.7
1,376,710	-				+0.4
1,376,754	-				-0.9
1,376,757	+				-0.0
1,376,760	-				-0.9
1,376,761	+				-0.9
1,376,761	+				-0.9
1,376,765	-				-1.0
1,376,765	-				-1.2
1,376,797	-				-1.8
1,376,797	-				-0.4
1,376,797	-				+0.3
1,376,797	-				+1.1
1,376,802	-				+1.9
1,376,953	+				+1.9
1,376,953	+		MMJJ_RS07490	0.50	+0.9
1,376,953	+		MMJJ_RS07490	0.50	+0.9
1,377,043	-		MMJJ_RS07490	0.84	-0.9
1,377,043	-		MMJJ_RS07490	0.84	+0.1
1,377,044	+		MMJJ_RS07490	0.84	-2.4
1,377,085	+				+1.0
1,377,113	-				-0.8
1,377,148	-		MMJJ_RS07495	0.19	-2.1
1,377,166	+		MMJJ_RS07495	0.29	-0.3
1,377,169	-		MMJJ_RS07495	0.30	+2.1
1,377,170	+		MMJJ_RS07495	0.31	-0.1
1,377,170	+		MMJJ_RS07495	0.31	+0.1
1,377,170	+		MMJJ_RS07495	0.31	+0.9
1,377,170	+		MMJJ_RS07495	0.31	+0.8
1,377,170	+		MMJJ_RS07495	0.31	+1.0
1,377,174	-		MMJJ_RS07495	0.33	-1.3
1,377,175	+		MMJJ_RS07495	0.33	+1.1
1,377,175	+		MMJJ_RS07495	0.33	+0.4
1,377,199	-		MMJJ_RS07495	0.46	+0.3
1,377,199	-		MMJJ_RS07495	0.46	+1.4
1,377,199	-		MMJJ_RS07495	0.46	-1.6
1,377,200	+		MMJJ_RS07495	0.47	-0.3
1,377,229	-		MMJJ_RS07495	0.62	+3.0
1,377,229	-		MMJJ_RS07495	0.62	-1.6
1,377,229	-		MMJJ_RS07495	0.62	-0.7
1,377,245	+		MMJJ_RS07495	0.70	+0.8
1,377,271	+		MMJJ_RS07495	0.84	-0.4
1,377,281	-		MMJJ_RS07495	0.89	-0.0
1,377,290	+				+1.6
1,377,328	+				-0.6
1,377,329	-				+1.1
1,377,330	+				+0.7
1,377,347	+				+1.6
1,377,359	-				-2.6
1,377,359	-				-1.9
1,377,360	+				-0.2
1,377,460	+		MMJJ_RS07500	0.12	-0.2
1,377,520	-		MMJJ_RS07500	0.18	+2.9
1,377,527	-		MMJJ_RS07500	0.19	+0.4
1,377,528	+		MMJJ_RS07500	0.19	-0.4
1,377,529	-		MMJJ_RS07500	0.19	+1.3
1,377,529	-		MMJJ_RS07500	0.19	-0.4
1,377,530	+		MMJJ_RS07500	0.19	+1.2
1,377,530	+		MMJJ_RS07500	0.19	-0.9
1,377,562	-		MMJJ_RS07500	0.23	+0.3
1,377,563	+		MMJJ_RS07500	0.23	-0.5
1,377,633	-		MMJJ_RS07500	0.30	+1.9
1,377,648	-		MMJJ_RS07500	0.32	+1.0
1,377,649	+		MMJJ_RS07500	0.32	+1.2
1,377,649	+		MMJJ_RS07500	0.32	+1.6
1,377,652	-		MMJJ_RS07500	0.32	+0.1
1,377,653	+		MMJJ_RS07500	0.33	+2.2
1,377,703	+		MMJJ_RS07500	0.38	-1.0
1,377,705	-		MMJJ_RS07500	0.38	-0.5