Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS06060

Experiment: H2 N-free with 2mM Adenosine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS06055 and MMJJ_RS06060 are separated by 194 nucleotidesMMJJ_RS06060 and MMJJ_RS06065 are separated by 86 nucleotidesMMJJ_RS06065 and MMJJ_RS06070 are separated by 69 nucleotides MMJJ_RS06055: MMJJ_RS06055 - S-methyl-5-thioribose-1-phosphate isomerase, at 1,124,620 to 1,125,585 _RS06055 MMJJ_RS06060: MMJJ_RS06060 - aspartate--tRNA(Asn) ligase, at 1,125,780 to 1,127,096 _RS06060 MMJJ_RS06065: MMJJ_RS06065 - metal-sulfur cluster assembly factor, at 1,127,183 to 1,127,482 _RS06065 MMJJ_RS06070: MMJJ_RS06070 - histidine--tRNA ligase, at 1,127,552 to 1,128,802 _RS06070 Position (kb) 1125 1126 1127 1128Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8 9 10 11at 1124.813 kb on - strand, within MMJJ_RS06055at 1124.848 kb on - strand, within MMJJ_RS06055at 1124.976 kb on + strand, within MMJJ_RS06055at 1125.030 kb on - strand, within MMJJ_RS06055at 1125.033 kb on - strand, within MMJJ_RS06055at 1125.034 kb on + strand, within MMJJ_RS06055at 1125.048 kb on - strand, within MMJJ_RS06055at 1125.090 kb on + strand, within MMJJ_RS06055at 1125.099 kb on - strand, within MMJJ_RS06055at 1125.100 kb on + strand, within MMJJ_RS06055at 1125.112 kb on - strand, within MMJJ_RS06055at 1125.113 kb on + strand, within MMJJ_RS06055at 1125.113 kb on + strand, within MMJJ_RS06055at 1125.134 kb on - strand, within MMJJ_RS06055at 1125.134 kb on - strand, within MMJJ_RS06055at 1125.134 kb on - strand, within MMJJ_RS06055at 1125.134 kb on - strand, within MMJJ_RS06055at 1125.135 kb on + strand, within MMJJ_RS06055at 1125.135 kb on + strand, within MMJJ_RS06055at 1125.138 kb on + strand, within MMJJ_RS06055at 1125.138 kb on + strand, within MMJJ_RS06055at 1125.212 kb on - strand, within MMJJ_RS06055at 1125.213 kb on + strand, within MMJJ_RS06055at 1125.273 kb on + strand, within MMJJ_RS06055at 1125.276 kb on + strand, within MMJJ_RS06055at 1125.345 kb on + strand, within MMJJ_RS06055at 1125.388 kb on - strand, within MMJJ_RS06055at 1125.393 kb on - strand, within MMJJ_RS06055at 1125.394 kb on + strand, within MMJJ_RS06055at 1125.423 kb on - strand, within MMJJ_RS06055at 1125.423 kb on - strand, within MMJJ_RS06055at 1125.424 kb on + strand, within MMJJ_RS06055at 1125.424 kb on + strand, within MMJJ_RS06055at 1125.462 kb on - strand, within MMJJ_RS06055at 1125.462 kb on - strand, within MMJJ_RS06055at 1125.468 kb on - strand, within MMJJ_RS06055at 1125.473 kb on - strand, within MMJJ_RS06055at 1125.473 kb on - strand, within MMJJ_RS06055at 1125.503 kb on + strandat 1125.540 kb on - strandat 1125.567 kb on + strandat 1125.579 kb on - strandat 1125.579 kb on - strandat 1125.579 kb on - strandat 1125.584 kb on + strandat 1125.613 kb on + strandat 1125.643 kb on - strandat 1125.644 kb on + strandat 1125.648 kb on - strandat 1125.649 kb on + strandat 1125.653 kb on - strandat 1125.653 kb on - strandat 1125.653 kb on - strandat 1125.653 kb on - strandat 1125.664 kb on + strandat 1125.668 kb on - strandat 1125.668 kb on - strandat 1125.669 kb on + strandat 1125.669 kb on + strandat 1125.670 kb on - strandat 1125.670 kb on - strandat 1125.670 kb on - strandat 1125.670 kb on - strandat 1125.670 kb on - strandat 1125.673 kb on - strandat 1125.674 kb on + strandat 1125.674 kb on + strandat 1125.682 kb on - strandat 1125.682 kb on - strandat 1125.682 kb on - strandat 1125.682 kb on - strandat 1125.687 kb on - strandat 1125.688 kb on + strandat 1125.688 kb on + strandat 1125.688 kb on + strandat 1125.688 kb on + strandat 1125.688 kb on + strandat 1125.688 kb on + strandat 1125.688 kb on + strandat 1125.688 kb on + strandat 1125.692 kb on - strandat 1125.693 kb on + strandat 1125.699 kb on - strandat 1125.699 kb on - strandat 1125.699 kb on - strandat 1125.700 kb on + strandat 1125.700 kb on + strandat 1125.700 kb on + strandat 1125.700 kb on + strandat 1125.700 kb on + strandat 1125.755 kb on - strandat 1125.769 kb on + strandat 1126.289 kb on + strand, within MMJJ_RS06060at 1127.119 kb on - strandat 1127.122 kb on - strandat 1127.122 kb on - strandat 1127.125 kb on - strandat 1127.133 kb on - strandat 1127.192 kb on + strandat 1127.223 kb on - strand, within MMJJ_RS06065at 1127.266 kb on - strand, within MMJJ_RS06065at 1127.314 kb on + strand, within MMJJ_RS06065at 1127.443 kb on + strandat 1127.504 kb on - strandat 1127.506 kb on - strandat 1127.507 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 2mM Adenosine
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1,124,813 - MMJJ_RS06055 0.20 -1.7
1,124,848 - MMJJ_RS06055 0.24 -0.4
1,124,976 + MMJJ_RS06055 0.37 +2.5
1,125,030 - MMJJ_RS06055 0.42 -0.1
1,125,033 - MMJJ_RS06055 0.43 -1.8
1,125,034 + MMJJ_RS06055 0.43 -0.0
1,125,048 - MMJJ_RS06055 0.44 +0.2
1,125,090 + MMJJ_RS06055 0.49 +0.3
1,125,099 - MMJJ_RS06055 0.50 -0.1
1,125,100 + MMJJ_RS06055 0.50 +1.1
1,125,112 - MMJJ_RS06055 0.51 -1.3
1,125,113 + MMJJ_RS06055 0.51 +2.8
1,125,113 + MMJJ_RS06055 0.51 +2.8
1,125,134 - MMJJ_RS06055 0.53 +0.8
1,125,134 - MMJJ_RS06055 0.53 +1.9
1,125,134 - MMJJ_RS06055 0.53 -0.1
1,125,134 - MMJJ_RS06055 0.53 -0.6
1,125,135 + MMJJ_RS06055 0.53 +1.0
1,125,135 + MMJJ_RS06055 0.53 -0.0
1,125,138 + MMJJ_RS06055 0.54 +0.7
1,125,138 + MMJJ_RS06055 0.54 +0.6
1,125,212 - MMJJ_RS06055 0.61 +1.3
1,125,213 + MMJJ_RS06055 0.61 +0.7
1,125,273 + MMJJ_RS06055 0.68 +0.2
1,125,276 + MMJJ_RS06055 0.68 +2.8
1,125,345 + MMJJ_RS06055 0.75 -0.5
1,125,388 - MMJJ_RS06055 0.80 -0.2
1,125,393 - MMJJ_RS06055 0.80 +1.1
1,125,394 + MMJJ_RS06055 0.80 -0.9
1,125,423 - MMJJ_RS06055 0.83 +1.2
1,125,423 - MMJJ_RS06055 0.83 +0.9
1,125,424 + MMJJ_RS06055 0.83 +1.1
1,125,424 + MMJJ_RS06055 0.83 -2.0
1,125,462 - MMJJ_RS06055 0.87 +1.4
1,125,462 - MMJJ_RS06055 0.87 +0.2
1,125,468 - MMJJ_RS06055 0.88 -0.4
1,125,473 - MMJJ_RS06055 0.88 -0.6
1,125,473 - MMJJ_RS06055 0.88 +1.4
1,125,503 + +3.5
1,125,540 - +0.5
1,125,567 + -0.9
1,125,579 - -0.4
1,125,579 - -1.8
1,125,579 - +0.9
1,125,584 + -1.3
1,125,613 + +0.1
1,125,643 - +0.5
1,125,644 + -1.6
1,125,648 - -0.8
1,125,649 + -0.8
1,125,653 - +0.3
1,125,653 - -1.5
1,125,653 - -0.6
1,125,653 - -2.1
1,125,664 + -0.4
1,125,668 - -2.2
1,125,668 - -0.9
1,125,669 + +0.9
1,125,669 + +0.2
1,125,670 - -0.2
1,125,670 - -3.5
1,125,670 - +0.3
1,125,670 - +0.2
1,125,670 - +1.7
1,125,673 - +0.4
1,125,674 + +1.7
1,125,674 + +3.8
1,125,682 - +0.6
1,125,682 - +1.8
1,125,682 - -1.2
1,125,682 - -0.9
1,125,687 - -1.3
1,125,688 + -0.7
1,125,688 + +2.8
1,125,688 + -1.7
1,125,688 + -1.0
1,125,688 + +1.0
1,125,688 + +0.3
1,125,688 + +0.3
1,125,688 + +0.6
1,125,692 - -1.1
1,125,693 + -0.5
1,125,699 - +0.0
1,125,699 - +10.9
1,125,699 - -0.1
1,125,700 + +6.3
1,125,700 + +1.8
1,125,700 + -0.9
1,125,700 + -1.6
1,125,700 + -3.6
1,125,755 - +0.6
1,125,769 + +3.8
1,126,289 + MMJJ_RS06060 0.39 +1.2
1,127,119 - -1.2
1,127,122 - -2.5
1,127,122 - +0.6
1,127,125 - -0.2
1,127,133 - +1.8
1,127,192 + +1.5
1,127,223 - MMJJ_RS06065 0.13 +0.5
1,127,266 - MMJJ_RS06065 0.28 +0.6
1,127,314 + MMJJ_RS06065 0.44 +1.5
1,127,443 + +1.8
1,127,504 - +1.0
1,127,506 - +1.0
1,127,507 + +1.8

Or see this region's nucleotide sequence