Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS03995

Experiment: H2 N-free with 2mM Adenosine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS03985 and MMJJ_RS03990 are separated by 11 nucleotidesMMJJ_RS03990 and MMJJ_RS03995 are separated by 34 nucleotidesMMJJ_RS03995 and MMJJ_RS04000 are separated by 20 nucleotides MMJJ_RS03985: MMJJ_RS03985 - TATA-box-binding protein, at 742,310 to 742,855 _RS03985 MMJJ_RS03990: MMJJ_RS03990 - imidazole glycerol phosphate synthase subunit HisH, at 742,867 to 743,478 _RS03990 MMJJ_RS03995: MMJJ_RS03995 - PHP domain-containing protein, at 743,513 to 744,412 _RS03995 MMJJ_RS04000: MMJJ_RS04000 - NAD(P)H-hydrate dehydratase, at 744,433 to 745,959 _RS04000 Position (kb) 743 744 745Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 742.710 kb on + strandat 743.480 kb on - strandat 743.485 kb on + strandat 743.518 kb on - strandat 743.519 kb on + strandat 743.519 kb on + strandat 743.531 kb on - strandat 743.532 kb on + strandat 743.532 kb on + strandat 743.570 kb on - strandat 743.571 kb on + strandat 743.571 kb on + strandat 743.673 kb on + strand, within MMJJ_RS03995at 743.677 kb on - strand, within MMJJ_RS03995at 743.727 kb on - strand, within MMJJ_RS03995at 743.754 kb on + strand, within MMJJ_RS03995at 743.816 kb on - strand, within MMJJ_RS03995at 743.947 kb on - strand, within MMJJ_RS03995at 743.955 kb on + strand, within MMJJ_RS03995at 743.974 kb on + strand, within MMJJ_RS03995at 744.014 kb on - strand, within MMJJ_RS03995at 744.014 kb on - strand, within MMJJ_RS03995at 744.014 kb on - strand, within MMJJ_RS03995at 744.143 kb on - strand, within MMJJ_RS03995at 744.173 kb on - strand, within MMJJ_RS03995at 744.188 kb on - strand, within MMJJ_RS03995at 744.189 kb on + strand, within MMJJ_RS03995at 744.377 kb on - strandat 744.385 kb on - strandat 744.398 kb on - strandat 744.430 kb on - strandat 744.439 kb on - strandat 744.478 kb on + strandat 744.491 kb on - strandat 744.492 kb on + strandat 744.540 kb on - strandat 744.542 kb on - strandat 744.542 kb on - strandat 744.542 kb on - strandat 744.542 kb on - strandat 744.543 kb on + strandat 744.543 kb on + strandat 744.543 kb on + strandat 744.608 kb on + strand, within MMJJ_RS04000at 744.608 kb on + strand, within MMJJ_RS04000at 744.610 kb on - strand, within MMJJ_RS04000at 744.610 kb on - strand, within MMJJ_RS04000at 744.610 kb on - strand, within MMJJ_RS04000at 744.610 kb on - strand, within MMJJ_RS04000at 744.610 kb on - strand, within MMJJ_RS04000at 744.610 kb on - strand, within MMJJ_RS04000at 744.611 kb on + strand, within MMJJ_RS04000at 744.611 kb on + strand, within MMJJ_RS04000at 744.611 kb on + strand, within MMJJ_RS04000at 744.611 kb on + strand, within MMJJ_RS04000at 744.611 kb on + strand, within MMJJ_RS04000at 744.611 kb on + strand, within MMJJ_RS04000at 744.611 kb on + strand, within MMJJ_RS04000at 744.611 kb on + strand, within MMJJ_RS04000at 744.611 kb on + strand, within MMJJ_RS04000at 744.664 kb on + strand, within MMJJ_RS04000at 744.664 kb on + strand, within MMJJ_RS04000at 744.667 kb on + strand, within MMJJ_RS04000at 744.667 kb on + strand, within MMJJ_RS04000at 744.669 kb on - strand, within MMJJ_RS04000at 744.685 kb on - strand, within MMJJ_RS04000at 744.685 kb on - strand, within MMJJ_RS04000at 744.685 kb on - strand, within MMJJ_RS04000at 744.685 kb on - strand, within MMJJ_RS04000at 744.686 kb on + strand, within MMJJ_RS04000at 744.686 kb on + strand, within MMJJ_RS04000at 744.687 kb on - strand, within MMJJ_RS04000at 744.687 kb on - strand, within MMJJ_RS04000at 744.703 kb on - strand, within MMJJ_RS04000at 744.703 kb on - strand, within MMJJ_RS04000at 744.704 kb on + strand, within MMJJ_RS04000at 744.704 kb on + strand, within MMJJ_RS04000at 744.740 kb on - strand, within MMJJ_RS04000at 744.748 kb on + strand, within MMJJ_RS04000at 744.752 kb on - strand, within MMJJ_RS04000at 744.753 kb on + strand, within MMJJ_RS04000at 744.765 kb on + strand, within MMJJ_RS04000at 744.796 kb on + strand, within MMJJ_RS04000at 744.796 kb on + strand, within MMJJ_RS04000at 744.796 kb on + strand, within MMJJ_RS04000at 744.838 kb on - strand, within MMJJ_RS04000at 744.856 kb on + strand, within MMJJ_RS04000at 744.859 kb on - strand, within MMJJ_RS04000at 744.859 kb on - strand, within MMJJ_RS04000at 744.860 kb on + strand, within MMJJ_RS04000at 744.880 kb on - strand, within MMJJ_RS04000at 744.880 kb on - strand, within MMJJ_RS04000at 744.881 kb on + strand, within MMJJ_RS04000at 744.892 kb on - strand, within MMJJ_RS04000at 744.996 kb on - strand, within MMJJ_RS04000at 744.998 kb on - strand, within MMJJ_RS04000at 744.998 kb on - strand, within MMJJ_RS04000at 744.999 kb on + strand, within MMJJ_RS04000at 745.024 kb on - strand, within MMJJ_RS04000at 745.051 kb on - strand, within MMJJ_RS04000at 745.051 kb on - strand, within MMJJ_RS04000at 745.052 kb on + strand, within MMJJ_RS04000at 745.052 kb on + strand, within MMJJ_RS04000at 745.052 kb on + strand, within MMJJ_RS04000at 745.052 kb on + strand, within MMJJ_RS04000at 745.052 kb on + strand, within MMJJ_RS04000at 745.083 kb on - strand, within MMJJ_RS04000at 745.096 kb on + strand, within MMJJ_RS04000at 745.134 kb on + strand, within MMJJ_RS04000at 745.190 kb on + strand, within MMJJ_RS04000at 745.207 kb on - strand, within MMJJ_RS04000at 745.242 kb on - strand, within MMJJ_RS04000at 745.242 kb on - strand, within MMJJ_RS04000at 745.243 kb on + strand, within MMJJ_RS04000at 745.243 kb on + strand, within MMJJ_RS04000at 745.244 kb on - strand, within MMJJ_RS04000at 745.244 kb on - strand, within MMJJ_RS04000at 745.245 kb on + strand, within MMJJ_RS04000at 745.245 kb on + strand, within MMJJ_RS04000at 745.315 kb on + strand, within MMJJ_RS04000at 745.315 kb on + strand, within MMJJ_RS04000at 745.382 kb on - strand, within MMJJ_RS04000at 745.382 kb on - strand, within MMJJ_RS04000at 745.382 kb on - strand, within MMJJ_RS04000at 745.383 kb on + strand, within MMJJ_RS04000at 745.394 kb on + strand, within MMJJ_RS04000

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 2mM Adenosine
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742,710 + +1.6
743,480 - +0.9
743,485 + -0.9
743,518 - +0.9
743,519 + +1.6
743,519 + -1.4
743,531 - +1.1
743,532 + +0.5
743,532 + -1.1
743,570 - -0.4
743,571 + +0.3
743,571 + -0.2
743,673 + MMJJ_RS03995 0.18 -1.3
743,677 - MMJJ_RS03995 0.18 -0.5
743,727 - MMJJ_RS03995 0.24 +0.0
743,754 + MMJJ_RS03995 0.27 -0.5
743,816 - MMJJ_RS03995 0.34 +0.8
743,947 - MMJJ_RS03995 0.48 -0.4
743,955 + MMJJ_RS03995 0.49 -2.0
743,974 + MMJJ_RS03995 0.51 +0.6
744,014 - MMJJ_RS03995 0.56 -3.1
744,014 - MMJJ_RS03995 0.56 +0.3
744,014 - MMJJ_RS03995 0.56 +1.6
744,143 - MMJJ_RS03995 0.70 +0.6
744,173 - MMJJ_RS03995 0.73 -0.7
744,188 - MMJJ_RS03995 0.75 -0.5
744,189 + MMJJ_RS03995 0.75 +0.6
744,377 - -0.2
744,385 - +0.8
744,398 - -1.0
744,430 - +0.0
744,439 - -1.1
744,478 + -2.6
744,491 - -0.8
744,492 + -2.4
744,540 - +0.3
744,542 - -0.4
744,542 - -1.4
744,542 - -1.4
744,542 - -1.5
744,543 + -0.5
744,543 + +0.9
744,543 + -0.5
744,608 + MMJJ_RS04000 0.11 -0.6
744,608 + MMJJ_RS04000 0.11 -0.5
744,610 - MMJJ_RS04000 0.12 -0.5
744,610 - MMJJ_RS04000 0.12 -1.9
744,610 - MMJJ_RS04000 0.12 +0.7
744,610 - MMJJ_RS04000 0.12 +0.4
744,610 - MMJJ_RS04000 0.12 -0.2
744,610 - MMJJ_RS04000 0.12 -1.3
744,611 + MMJJ_RS04000 0.12 -0.8
744,611 + MMJJ_RS04000 0.12 -2.0
744,611 + MMJJ_RS04000 0.12 -0.8
744,611 + MMJJ_RS04000 0.12 -1.5
744,611 + MMJJ_RS04000 0.12 -0.6
744,611 + MMJJ_RS04000 0.12 -2.2
744,611 + MMJJ_RS04000 0.12 -2.5
744,611 + MMJJ_RS04000 0.12 -2.6
744,611 + MMJJ_RS04000 0.12 -2.2
744,664 + MMJJ_RS04000 0.15 +1.0
744,664 + MMJJ_RS04000 0.15 -0.6
744,667 + MMJJ_RS04000 0.15 -1.0
744,667 + MMJJ_RS04000 0.15 +0.7
744,669 - MMJJ_RS04000 0.15 -2.1
744,685 - MMJJ_RS04000 0.17 +0.5
744,685 - MMJJ_RS04000 0.17 -0.6
744,685 - MMJJ_RS04000 0.17 -0.6
744,685 - MMJJ_RS04000 0.17 -2.1
744,686 + MMJJ_RS04000 0.17 +5.2
744,686 + MMJJ_RS04000 0.17 -2.4
744,687 - MMJJ_RS04000 0.17 -0.3
744,687 - MMJJ_RS04000 0.17 +0.4
744,703 - MMJJ_RS04000 0.18 -2.5
744,703 - MMJJ_RS04000 0.18 -0.6
744,704 + MMJJ_RS04000 0.18 -0.8
744,704 + MMJJ_RS04000 0.18 +0.0
744,740 - MMJJ_RS04000 0.20 -2.3
744,748 + MMJJ_RS04000 0.21 -0.5
744,752 - MMJJ_RS04000 0.21 -1.0
744,753 + MMJJ_RS04000 0.21 +0.0
744,765 + MMJJ_RS04000 0.22 -2.1
744,796 + MMJJ_RS04000 0.24 +0.2
744,796 + MMJJ_RS04000 0.24 -0.1
744,796 + MMJJ_RS04000 0.24 +1.0
744,838 - MMJJ_RS04000 0.27 -0.5
744,856 + MMJJ_RS04000 0.28 +2.0
744,859 - MMJJ_RS04000 0.28 -1.2
744,859 - MMJJ_RS04000 0.28 +0.0
744,860 + MMJJ_RS04000 0.28 -0.0
744,880 - MMJJ_RS04000 0.29 -0.5
744,880 - MMJJ_RS04000 0.29 -1.0
744,881 + MMJJ_RS04000 0.29 +1.4
744,892 - MMJJ_RS04000 0.30 +0.2
744,996 - MMJJ_RS04000 0.37 -0.2
744,998 - MMJJ_RS04000 0.37 +0.4
744,998 - MMJJ_RS04000 0.37 +0.0
744,999 + MMJJ_RS04000 0.37 +0.0
745,024 - MMJJ_RS04000 0.39 -1.4
745,051 - MMJJ_RS04000 0.40 -1.9
745,051 - MMJJ_RS04000 0.40 -2.6
745,052 + MMJJ_RS04000 0.41 +1.0
745,052 + MMJJ_RS04000 0.41 -3.1
745,052 + MMJJ_RS04000 0.41 -1.8
745,052 + MMJJ_RS04000 0.41 +1.7
745,052 + MMJJ_RS04000 0.41 +2.1
745,083 - MMJJ_RS04000 0.43 +0.1
745,096 + MMJJ_RS04000 0.43 -1.1
745,134 + MMJJ_RS04000 0.46 -2.0
745,190 + MMJJ_RS04000 0.50 +1.3
745,207 - MMJJ_RS04000 0.51 -0.9
745,242 - MMJJ_RS04000 0.53 -1.2
745,242 - MMJJ_RS04000 0.53 +0.0
745,243 + MMJJ_RS04000 0.53 +1.7
745,243 + MMJJ_RS04000 0.53 -1.8
745,244 - MMJJ_RS04000 0.53 +3.4
745,244 - MMJJ_RS04000 0.53 -2.2
745,245 + MMJJ_RS04000 0.53 +0.1
745,245 + MMJJ_RS04000 0.53 -0.1
745,315 + MMJJ_RS04000 0.58 +2.5
745,315 + MMJJ_RS04000 0.58 -1.5
745,382 - MMJJ_RS04000 0.62 -2.1
745,382 - MMJJ_RS04000 0.62 +1.2
745,382 - MMJJ_RS04000 0.62 +1.3
745,383 + MMJJ_RS04000 0.62 -0.6
745,394 + MMJJ_RS04000 0.63 +0.7

Or see this region's nucleotide sequence