Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS02275

Experiment: H2 N-free with 2mM Adenosine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS02265 and MMJJ_RS02270 are separated by 157 nucleotidesMMJJ_RS02270 and MMJJ_RS02275 overlap by 14 nucleotidesMMJJ_RS02275 and MMJJ_RS02280 are separated by 231 nucleotides MMJJ_RS02265: MMJJ_RS02265 - hypothetical protein, at 427,859 to 429,328 _RS02265 MMJJ_RS02270: MMJJ_RS02270 - HEPN domain-containing protein, at 429,486 to 429,995 _RS02270 MMJJ_RS02275: MMJJ_RS02275 - nucleotidyltransferase domain-containing protein, at 429,982 to 430,599 _RS02275 MMJJ_RS02280: MMJJ_RS02280 - sulfate permease, at 430,831 to 432,489 _RS02280 Position (kb) 429 430 431Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8 9at 428.988 kb on - strand, within MMJJ_RS02265at 429.030 kb on + strand, within MMJJ_RS02265at 429.125 kb on - strand, within MMJJ_RS02265at 429.181 kb on - strand, within MMJJ_RS02265at 429.235 kb on - strandat 429.289 kb on - strandat 429.302 kb on + strandat 429.309 kb on + strandat 429.331 kb on + strandat 429.357 kb on - strandat 429.357 kb on - strandat 429.357 kb on - strandat 429.357 kb on - strandat 429.358 kb on + strandat 429.358 kb on + strandat 429.359 kb on - strandat 429.359 kb on - strandat 429.360 kb on + strandat 429.365 kb on - strandat 429.365 kb on - strandat 429.365 kb on - strandat 429.366 kb on + strandat 429.366 kb on + strandat 429.366 kb on + strandat 429.366 kb on + strandat 429.366 kb on + strandat 429.382 kb on - strandat 429.383 kb on + strandat 429.383 kb on + strandat 429.394 kb on + strandat 429.406 kb on - strandat 429.410 kb on - strandat 429.423 kb on + strandat 429.433 kb on + strandat 429.435 kb on + strandat 429.458 kb on + strandat 429.516 kb on - strandat 429.546 kb on - strand, within MMJJ_RS02270at 429.547 kb on + strand, within MMJJ_RS02270at 429.610 kb on + strand, within MMJJ_RS02270at 429.638 kb on - strand, within MMJJ_RS02270at 429.703 kb on + strand, within MMJJ_RS02270at 429.803 kb on - strand, within MMJJ_RS02270at 429.843 kb on - strand, within MMJJ_RS02270at 429.858 kb on + strand, within MMJJ_RS02270at 429.943 kb on - strand, within MMJJ_RS02270at 429.976 kb on - strandat 430.109 kb on + strand, within MMJJ_RS02275at 430.111 kb on + strand, within MMJJ_RS02275at 430.111 kb on + strand, within MMJJ_RS02275at 430.111 kb on + strand, within MMJJ_RS02275at 430.114 kb on - strand, within MMJJ_RS02275at 430.350 kb on - strand, within MMJJ_RS02275at 430.350 kb on - strand, within MMJJ_RS02275at 430.424 kb on - strand, within MMJJ_RS02275at 430.447 kb on - strand, within MMJJ_RS02275at 430.536 kb on - strand, within MMJJ_RS02275at 430.566 kb on + strandat 430.568 kb on - strandat 430.569 kb on + strandat 430.579 kb on - strandat 430.613 kb on + strandat 430.619 kb on + strandat 430.622 kb on - strandat 430.622 kb on - strandat 430.622 kb on - strandat 430.623 kb on + strandat 430.623 kb on + strandat 430.624 kb on - strandat 430.680 kb on - strandat 430.680 kb on - strandat 430.693 kb on - strandat 430.693 kb on - strandat 430.693 kb on - strandat 430.694 kb on + strandat 430.698 kb on + strandat 430.699 kb on - strandat 430.700 kb on + strandat 430.700 kb on + strandat 430.700 kb on + strandat 430.700 kb on + strandat 430.705 kb on + strandat 430.710 kb on + strandat 430.722 kb on + strandat 430.736 kb on + strandat 430.739 kb on - strandat 430.740 kb on + strandat 430.740 kb on + strandat 430.740 kb on + strandat 430.741 kb on - strandat 430.741 kb on - strandat 430.742 kb on + strandat 430.743 kb on - strandat 430.744 kb on + strandat 430.762 kb on - strandat 430.764 kb on - strandat 430.765 kb on + strandat 430.765 kb on + strandat 430.787 kb on + strandat 430.790 kb on - strandat 430.796 kb on + strandat 430.796 kb on + strandat 430.808 kb on + strandat 430.808 kb on + strandat 430.828 kb on - strandat 430.828 kb on - strandat 430.828 kb on - strandat 430.828 kb on - strandat 430.828 kb on - strandat 430.828 kb on - strandat 430.828 kb on - strandat 430.828 kb on - strandat 430.829 kb on + strandat 430.829 kb on + strandat 430.846 kb on + strandat 430.878 kb on + strandat 430.901 kb on - strandat 430.902 kb on + strandat 430.964 kb on - strandat 430.992 kb on + strandat 430.992 kb on + strandat 431.073 kb on - strand, within MMJJ_RS02280at 431.074 kb on + strand, within MMJJ_RS02280at 431.126 kb on - strand, within MMJJ_RS02280at 431.160 kb on - strand, within MMJJ_RS02280at 431.196 kb on - strand, within MMJJ_RS02280at 431.197 kb on + strand, within MMJJ_RS02280at 431.217 kb on + strand, within MMJJ_RS02280at 431.295 kb on - strand, within MMJJ_RS02280at 431.295 kb on - strand, within MMJJ_RS02280at 431.299 kb on - strand, within MMJJ_RS02280at 431.300 kb on + strand, within MMJJ_RS02280at 431.300 kb on + strand, within MMJJ_RS02280at 431.300 kb on + strand, within MMJJ_RS02280at 431.300 kb on + strand, within MMJJ_RS02280at 431.310 kb on - strand, within MMJJ_RS02280at 431.321 kb on - strand, within MMJJ_RS02280at 431.321 kb on - strand, within MMJJ_RS02280at 431.321 kb on - strand, within MMJJ_RS02280at 431.322 kb on + strand, within MMJJ_RS02280at 431.358 kb on + strand, within MMJJ_RS02280at 431.362 kb on + strand, within MMJJ_RS02280at 431.408 kb on - strand, within MMJJ_RS02280at 431.417 kb on - strand, within MMJJ_RS02280at 431.442 kb on - strand, within MMJJ_RS02280at 431.443 kb on + strand, within MMJJ_RS02280at 431.443 kb on + strandat 431.443 kb on + strand, within MMJJ_RS02280at 431.454 kb on + strand, within MMJJ_RS02280at 431.476 kb on + strand, within MMJJ_RS02280at 431.568 kb on - strand, within MMJJ_RS02280at 431.588 kb on - strand, within MMJJ_RS02280

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 2mM Adenosine
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428,988 - MMJJ_RS02265 0.77 +2.2
429,030 + MMJJ_RS02265 0.80 +0.9
429,125 - MMJJ_RS02265 0.86 +0.7
429,181 - MMJJ_RS02265 0.90 -0.9
429,235 - +0.6
429,289 - +1.2
429,302 + +1.0
429,309 + -0.8
429,331 + -0.4
429,357 - -1.4
429,357 - +0.2
429,357 - -2.2
429,357 - +0.4
429,358 + -1.2
429,358 + +3.8
429,359 - -0.3
429,359 - +1.0
429,360 + +1.0
429,365 - -1.7
429,365 - -0.1
429,365 - +1.2
429,366 + -0.7
429,366 + -0.7
429,366 + -0.7
429,366 + -0.3
429,366 + -0.8
429,382 - -0.4
429,383 + +1.1
429,383 + +0.7
429,394 + -0.6
429,406 - -0.2
429,410 - +0.5
429,423 + +0.8
429,433 + +0.1
429,435 + -2.6
429,458 + +0.3
429,516 - +0.7
429,546 - MMJJ_RS02270 0.12 -0.2
429,547 + MMJJ_RS02270 0.12 -1.5
429,610 + MMJJ_RS02270 0.24 -0.1
429,638 - MMJJ_RS02270 0.30 +2.3
429,703 + MMJJ_RS02270 0.43 +1.0
429,803 - MMJJ_RS02270 0.62 +0.3
429,843 - MMJJ_RS02270 0.70 +1.0
429,858 + MMJJ_RS02270 0.73 +0.1
429,943 - MMJJ_RS02270 0.90 +0.5
429,976 - -0.4
430,109 + MMJJ_RS02275 0.21 -1.4
430,111 + MMJJ_RS02275 0.21 -0.1
430,111 + MMJJ_RS02275 0.21 +0.1
430,111 + MMJJ_RS02275 0.21 +0.1
430,114 - MMJJ_RS02275 0.21 -0.2
430,350 - MMJJ_RS02275 0.60 -0.0
430,350 - MMJJ_RS02275 0.60 -0.7
430,424 - MMJJ_RS02275 0.72 +0.6
430,447 - MMJJ_RS02275 0.75 +0.2
430,536 - MMJJ_RS02275 0.90 -0.7
430,566 + -0.7
430,568 - -2.0
430,569 + +0.8
430,579 - -0.6
430,613 + -1.7
430,619 + -1.5
430,622 - +0.1
430,622 - -0.7
430,622 - -0.6
430,623 + +0.1
430,623 + +0.3
430,624 - -1.8
430,680 - +1.0
430,680 - +0.1
430,693 - +0.4
430,693 - -0.4
430,693 - +0.4
430,694 + +1.3
430,698 + -2.1
430,699 - -2.0
430,700 + +1.3
430,700 + +0.2
430,700 + +2.8
430,700 + +2.6
430,705 + -0.1
430,710 + +1.1
430,722 + +0.1
430,736 + +0.1
430,739 - +1.0
430,740 + +1.0
430,740 + -0.1
430,740 + +0.4
430,741 - +0.1
430,741 - -1.0
430,742 + +1.4
430,743 - -0.5
430,744 + +0.4
430,762 - -0.4
430,764 - -0.4
430,765 + -0.1
430,765 + -1.5
430,787 + -1.1
430,790 - +0.2
430,796 + -0.6
430,796 + +0.3
430,808 + -1.9
430,808 + +0.2
430,828 - -1.1
430,828 - -1.4
430,828 - +1.2
430,828 - +0.7
430,828 - +0.7
430,828 - -2.3
430,828 - +1.0
430,828 - +0.4
430,829 + -2.0
430,829 + +0.8
430,846 + +0.9
430,878 + -2.0
430,901 - -1.4
430,902 + +0.3
430,964 - -0.1
430,992 + -1.4
430,992 + +0.1
431,073 - MMJJ_RS02280 0.15 -1.7
431,074 + MMJJ_RS02280 0.15 +0.2
431,126 - MMJJ_RS02280 0.18 -3.3
431,160 - MMJJ_RS02280 0.20 -0.3
431,196 - MMJJ_RS02280 0.22 -0.3
431,197 + MMJJ_RS02280 0.22 -0.2
431,217 + MMJJ_RS02280 0.23 -1.3
431,295 - MMJJ_RS02280 0.28 +0.2
431,295 - MMJJ_RS02280 0.28 -1.2
431,299 - MMJJ_RS02280 0.28 +1.2
431,300 + MMJJ_RS02280 0.28 -0.4
431,300 + MMJJ_RS02280 0.28 -0.4
431,300 + MMJJ_RS02280 0.28 -0.4
431,300 + MMJJ_RS02280 0.28 +1.0
431,310 - MMJJ_RS02280 0.29 -1.8
431,321 - MMJJ_RS02280 0.30 +0.8
431,321 - MMJJ_RS02280 0.30 +1.5
431,321 - MMJJ_RS02280 0.30 +9.3
431,322 + MMJJ_RS02280 0.30 -2.2
431,358 + MMJJ_RS02280 0.32 -0.8
431,362 + MMJJ_RS02280 0.32 +0.9
431,408 - MMJJ_RS02280 0.35 +1.3
431,417 - MMJJ_RS02280 0.35 +0.2
431,442 - MMJJ_RS02280 0.37 +0.1
431,443 + MMJJ_RS02280 0.37 +1.1
431,443 + +1.2
431,443 + MMJJ_RS02280 0.37 +0.3
431,454 + MMJJ_RS02280 0.38 +1.8
431,476 + MMJJ_RS02280 0.39 +0.1
431,568 - MMJJ_RS02280 0.44 +0.8
431,588 - MMJJ_RS02280 0.46 +1.8

Or see this region's nucleotide sequence