Experiment: H2 N-free with 2mM Adenosine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS01075 and MMJJ_RS01080 are separated by 9 nucleotides MMJJ_RS01080 and MMJJ_RS01085 overlap by 70 nucleotides MMJJ_RS01085 and MMJJ_RS01090 are separated by 660 nucleotides
MMJJ_RS01075: MMJJ_RS01075 - hypothetical protein, at 208,953 to 209,234
_RS01075
MMJJ_RS01080: MMJJ_RS01080 - hypothetical protein, at 209,244 to 209,834
_RS01080
MMJJ_RS01085: MMJJ_RS01085 - hypothetical protein, at 209,765 to 210,127
_RS01085
MMJJ_RS01090: MMJJ_RS01090 - hypothetical protein, at 210,788 to 211,474
_RS01090
Position (kb) 209
210
211 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8
9
10
11 at 208.767 kb on - strand at 208.768 kb on + strand at 208.771 kb on - strand at 208.772 kb on + strand at 208.778 kb on + strand at 208.778 kb on + strand at 208.801 kb on + strand at 208.801 kb on + strand at 208.804 kb on - strand at 208.804 kb on - strand at 208.804 kb on - strand at 208.804 kb on - strand at 208.804 kb on - strand at 208.805 kb on + strand at 208.805 kb on + strand at 208.805 kb on + strand at 208.806 kb on - strand at 208.806 kb on - strand at 208.807 kb on + strand at 208.808 kb on - strand at 208.811 kb on - strand at 208.811 kb on - strand at 208.816 kb on - strand at 208.817 kb on + strand at 208.849 kb on - strand at 208.862 kb on + strand at 208.878 kb on + strand at 208.882 kb on + strand at 208.911 kb on - strand at 208.930 kb on - strand at 208.930 kb on - strand at 208.940 kb on - strand at 208.971 kb on + strand at 208.974 kb on - strand at 208.975 kb on + strand at 208.992 kb on + strand, within MMJJ_RS01075 at 208.994 kb on - strand, within MMJJ_RS01075 at 208.997 kb on - strand, within MMJJ_RS01075 at 208.998 kb on + strand, within MMJJ_RS01075 at 209.002 kb on - strand, within MMJJ_RS01075 at 209.002 kb on - strand, within MMJJ_RS01075 at 209.003 kb on + strand, within MMJJ_RS01075 at 209.022 kb on + strand, within MMJJ_RS01075 at 209.034 kb on - strand, within MMJJ_RS01075 at 209.078 kb on - strand, within MMJJ_RS01075 at 209.078 kb on - strand, within MMJJ_RS01075 at 209.079 kb on + strand, within MMJJ_RS01075 at 209.096 kb on + strand, within MMJJ_RS01075 at 209.124 kb on + strand, within MMJJ_RS01075 at 209.124 kb on + strand, within MMJJ_RS01075 at 209.155 kb on - strand, within MMJJ_RS01075 at 209.156 kb on + strand, within MMJJ_RS01075 at 209.156 kb on + strand, within MMJJ_RS01075 at 209.156 kb on + strand, within MMJJ_RS01075 at 209.156 kb on + strand, within MMJJ_RS01075 at 209.159 kb on - strand, within MMJJ_RS01075 at 209.159 kb on - strand, within MMJJ_RS01075 at 209.159 kb on - strand, within MMJJ_RS01075 at 209.159 kb on - strand, within MMJJ_RS01075 at 209.160 kb on + strand, within MMJJ_RS01075 at 209.169 kb on - strand, within MMJJ_RS01075 at 209.170 kb on + strand, within MMJJ_RS01075 at 209.170 kb on + strand, within MMJJ_RS01075 at 209.170 kb on + strand, within MMJJ_RS01075 at 209.174 kb on - strand, within MMJJ_RS01075 at 209.175 kb on + strand, within MMJJ_RS01075 at 209.180 kb on + strand, within MMJJ_RS01075 at 209.208 kb on - strand at 209.208 kb on - strand at 209.208 kb on - strand at 209.208 kb on - strand at 209.208 kb on - strand at 209.208 kb on - strand at 209.208 kb on - strand at 209.208 kb on - strand at 209.208 kb on - strand at 209.208 kb on - strand at 209.209 kb on + strand at 209.209 kb on + strand at 209.209 kb on + strand at 209.209 kb on + strand at 209.209 kb on + strand at 209.209 kb on + strand at 209.209 kb on + strand at 209.209 kb on + strand at 209.209 kb on + strand at 209.209 kb on + strand at 209.209 kb on + strand at 209.209 kb on + strand at 209.209 kb on + strand at 209.212 kb on - strand at 209.212 kb on - strand at 209.213 kb on + strand at 209.213 kb on + strand at 209.216 kb on + strand at 209.225 kb on - strand at 209.233 kb on + strand at 209.237 kb on + strand at 209.237 kb on + strand at 209.240 kb on - strand at 209.245 kb on - strand at 209.245 kb on - strand at 209.249 kb on - strand at 209.249 kb on - strand at 209.250 kb on + strand at 209.269 kb on - strand at 209.269 kb on - strand at 209.269 kb on - strand at 209.269 kb on - strand at 209.269 kb on - strand at 209.269 kb on - strand at 209.269 kb on - strand at 209.269 kb on - strand at 209.269 kb on - strand at 209.269 kb on - strand at 209.270 kb on + strand at 209.270 kb on + strand at 209.270 kb on + strand at 209.270 kb on + strand at 209.270 kb on + strand at 209.270 kb on + strand at 209.270 kb on + strand at 209.270 kb on + strand at 209.273 kb on - strand at 209.286 kb on - strand at 209.289 kb on - strand at 209.289 kb on - strand at 209.290 kb on + strand at 209.295 kb on - strand at 209.297 kb on - strand at 209.316 kb on + strand, within MMJJ_RS01080 at 209.368 kb on + strand, within MMJJ_RS01080 at 209.372 kb on - strand, within MMJJ_RS01080 at 209.396 kb on + strand, within MMJJ_RS01080 at 209.414 kb on - strand, within MMJJ_RS01080 at 209.415 kb on + strand, within MMJJ_RS01080 at 209.415 kb on + strand, within MMJJ_RS01080 at 209.415 kb on + strand, within MMJJ_RS01080 at 209.415 kb on + strand, within MMJJ_RS01080 at 209.442 kb on - strand, within MMJJ_RS01080 at 209.442 kb on - strand, within MMJJ_RS01080 at 209.442 kb on - strand, within MMJJ_RS01080 at 209.477 kb on - strand, within MMJJ_RS01080 at 209.478 kb on + strand, within MMJJ_RS01080 at 209.480 kb on + strand, within MMJJ_RS01080 at 209.480 kb on + strand, within MMJJ_RS01080 at 209.482 kb on - strand, within MMJJ_RS01080 at 209.483 kb on + strand, within MMJJ_RS01080 at 209.502 kb on + strand, within MMJJ_RS01080 at 209.551 kb on - strand, within MMJJ_RS01080 at 209.551 kb on - strand, within MMJJ_RS01080 at 209.551 kb on - strand, within MMJJ_RS01080 at 209.552 kb on + strand, within MMJJ_RS01080 at 209.553 kb on - strand, within MMJJ_RS01080 at 209.553 kb on - strand, within MMJJ_RS01080 at 209.571 kb on - strand, within MMJJ_RS01080 at 209.571 kb on - strand, within MMJJ_RS01080 at 209.571 kb on - strand, within MMJJ_RS01080 at 209.572 kb on + strand, within MMJJ_RS01080 at 209.634 kb on - strand, within MMJJ_RS01080 at 209.634 kb on - strand, within MMJJ_RS01080 at 209.664 kb on - strand, within MMJJ_RS01080 at 209.664 kb on - strand, within MMJJ_RS01080 at 209.665 kb on + strand, within MMJJ_RS01080 at 209.665 kb on + strand, within MMJJ_RS01080 at 209.665 kb on + strand, within MMJJ_RS01080 at 209.681 kb on - strand, within MMJJ_RS01080 at 209.685 kb on - strand, within MMJJ_RS01080 at 209.685 kb on - strand, within MMJJ_RS01080 at 209.685 kb on - strand, within MMJJ_RS01080 at 209.686 kb on + strand, within MMJJ_RS01080 at 209.686 kb on + strand, within MMJJ_RS01080 at 209.686 kb on + strand, within MMJJ_RS01080 at 209.686 kb on + strand, within MMJJ_RS01080 at 209.686 kb on + strand, within MMJJ_RS01080 at 209.687 kb on - strand, within MMJJ_RS01080 at 209.687 kb on - strand, within MMJJ_RS01080 at 209.688 kb on + strand, within MMJJ_RS01080 at 209.688 kb on + strand, within MMJJ_RS01080 at 209.688 kb on + strand, within MMJJ_RS01080 at 209.690 kb on - strand, within MMJJ_RS01080 at 209.690 kb on - strand, within MMJJ_RS01080 at 209.691 kb on + strand, within MMJJ_RS01080 at 209.691 kb on + strand, within MMJJ_RS01080 at 209.691 kb on + strand, within MMJJ_RS01080 at 209.691 kb on + strand, within MMJJ_RS01080 at 209.691 kb on + strand, within MMJJ_RS01080 at 209.691 kb on + strand, within MMJJ_RS01080 at 209.691 kb on + strand, within MMJJ_RS01080 at 209.691 kb on + strand, within MMJJ_RS01080 at 209.692 kb on - strand, within MMJJ_RS01080 at 209.692 kb on - strand, within MMJJ_RS01080 at 209.692 kb on - strand, within MMJJ_RS01080 at 209.692 kb on - strand, within MMJJ_RS01080 at 209.692 kb on - strand, within MMJJ_RS01080 at 209.692 kb on - strand, within MMJJ_RS01080 at 209.692 kb on - strand, within MMJJ_RS01080 at 209.692 kb on - strand, within MMJJ_RS01080 at 209.693 kb on + strand, within MMJJ_RS01080 at 209.693 kb on + strand, within MMJJ_RS01080 at 209.693 kb on + strand, within MMJJ_RS01080 at 209.693 kb on + strand, within MMJJ_RS01080 at 209.693 kb on + strand, within MMJJ_RS01080 at 209.693 kb on + strand, within MMJJ_RS01080 at 209.706 kb on - strand, within MMJJ_RS01080 at 209.716 kb on - strand, within MMJJ_RS01080 at 209.766 kb on - strand at 209.779 kb on - strand at 209.779 kb on - strand at 209.779 kb on - strand at 209.780 kb on + strand at 209.780 kb on + strand at 209.795 kb on - strand at 209.800 kb on - strand at 209.801 kb on + strand at 209.801 kb on + strand at 209.802 kb on - strand at 209.802 kb on - strand at 209.803 kb on + strand at 209.803 kb on + strand at 209.847 kb on - strand, within MMJJ_RS01085 at 209.847 kb on - strand, within MMJJ_RS01085 at 209.848 kb on + strand, within MMJJ_RS01085 at 209.848 kb on + strand, within MMJJ_RS01085 at 209.867 kb on + strand, within MMJJ_RS01085 at 209.961 kb on + strand, within MMJJ_RS01085 at 210.067 kb on - strand, within MMJJ_RS01085 at 210.101 kb on - strand at 210.160 kb on - strand at 210.196 kb on - strand at 210.408 kb on + strand at 210.410 kb on + strand at 210.412 kb on + strand at 210.428 kb on - strand at 210.428 kb on - strand at 210.429 kb on + strand at 210.447 kb on - strand at 210.459 kb on - strand at 210.461 kb on - strand at 210.461 kb on - strand at 210.461 kb on - strand at 210.490 kb on + strand at 210.501 kb on + strand at 210.517 kb on - strand at 210.761 kb on - strand at 210.762 kb on + strand at 210.762 kb on + strand at 210.762 kb on + strand at 210.805 kb on - strand at 210.806 kb on + strand at 210.823 kb on - strand at 210.824 kb on + strand at 210.831 kb on - strand at 210.832 kb on + strand at 210.848 kb on - strand at 210.849 kb on + strand at 210.853 kb on - strand at 210.858 kb on + strand, within MMJJ_RS01090 at 210.932 kb on + strand, within MMJJ_RS01090
Per-strain Table
Position Strand Gene LocusTag Fraction H2 N-free with 2mM Adenosine remove 208,767 - +0.6 208,768 + +0.8 208,771 - -1.6 208,772 + -2.1 208,778 + -0.2 208,778 + -0.4 208,801 + +0.1 208,801 + +0.2 208,804 - -2.3 208,804 - -0.4 208,804 - -0.2 208,804 - +11.1 208,804 - +0.2 208,805 + -0.0 208,805 + +0.8 208,805 + +1.6 208,806 - +1.0 208,806 - +0.6 208,807 + +0.6 208,808 - -1.0 208,811 - +1.0 208,811 - -1.5 208,816 - -2.0 208,817 + -2.0 208,849 - -1.2 208,862 + -1.7 208,878 + -0.1 208,882 + +1.3 208,911 - -0.4 208,930 - -1.3 208,930 - -2.9 208,940 - -1.2 208,971 + -0.8 208,974 - +0.3 208,975 + +0.1 208,992 + MMJJ_RS01075 0.14 -3.0 208,994 - MMJJ_RS01075 0.15 +1.3 208,997 - MMJJ_RS01075 0.16 +0.1 208,998 + MMJJ_RS01075 0.16 +1.2 209,002 - MMJJ_RS01075 0.17 +0.9 209,002 - MMJJ_RS01075 0.17 -0.5 209,003 + MMJJ_RS01075 0.18 -0.5 209,022 + MMJJ_RS01075 0.24 +0.5 209,034 - MMJJ_RS01075 0.29 -0.1 209,078 - MMJJ_RS01075 0.44 +0.1 209,078 - MMJJ_RS01075 0.44 +7.4 209,079 + MMJJ_RS01075 0.45 -1.9 209,096 + MMJJ_RS01075 0.51 +0.1 209,124 + MMJJ_RS01075 0.61 +2.5 209,124 + MMJJ_RS01075 0.61 -2.2 209,155 - MMJJ_RS01075 0.72 -0.8 209,156 + MMJJ_RS01075 0.72 -0.5 209,156 + MMJJ_RS01075 0.72 -0.0 209,156 + MMJJ_RS01075 0.72 +0.1 209,156 + MMJJ_RS01075 0.72 +0.2 209,159 - MMJJ_RS01075 0.73 +0.1 209,159 - MMJJ_RS01075 0.73 -0.7 209,159 - MMJJ_RS01075 0.73 -0.5 209,159 - MMJJ_RS01075 0.73 -0.6 209,160 + MMJJ_RS01075 0.73 -0.8 209,169 - MMJJ_RS01075 0.77 -1.4 209,170 + MMJJ_RS01075 0.77 +1.2 209,170 + MMJJ_RS01075 0.77 -1.7 209,170 + MMJJ_RS01075 0.77 -1.2 209,174 - MMJJ_RS01075 0.78 -2.8 209,175 + MMJJ_RS01075 0.79 -0.7 209,180 + MMJJ_RS01075 0.80 +0.0 209,208 - -2.4 209,208 - -0.4 209,208 - -0.7 209,208 - +0.3 209,208 - +0.1 209,208 - +0.6 209,208 - -0.1 209,208 - -0.4 209,208 - +0.4 209,208 - -0.1 209,209 + +1.3 209,209 + +0.8 209,209 + +0.6 209,209 + -0.4 209,209 + +0.6 209,209 + -0.7 209,209 + +1.4 209,209 + -1.7 209,209 + -1.5 209,209 + -0.6 209,209 + +0.3 209,209 + -0.2 209,209 + +2.2 209,212 - -0.8 209,212 - +0.9 209,213 + +0.1 209,213 + -0.4 209,216 + +0.4 209,225 - +1.1 209,233 + -1.8 209,237 + -0.7 209,237 + +0.0 209,240 - +0.2 209,245 - +0.4 209,245 - +1.5 209,249 - -0.0 209,249 - +1.7 209,250 + +1.4 209,269 - +0.6 209,269 - -0.6 209,269 - -0.7 209,269 - -0.1 209,269 - -1.1 209,269 - -3.0 209,269 - -0.3 209,269 - -1.8 209,269 - -1.0 209,269 - -2.4 209,270 + -0.6 209,270 + +2.0 209,270 + -1.2 209,270 + +1.0 209,270 + -1.8 209,270 + -1.5 209,270 + -0.6 209,270 + +0.1 209,273 - +0.7 209,286 - +0.3 209,289 - +0.4 209,289 - +1.3 209,290 + -0.3 209,295 - +0.6 209,297 - -1.8 209,316 + MMJJ_RS01080 0.12 -1.4 209,368 + MMJJ_RS01080 0.21 +0.2 209,372 - MMJJ_RS01080 0.22 +1.2 209,396 + MMJJ_RS01080 0.26 -0.6 209,414 - MMJJ_RS01080 0.29 -1.0 209,415 + MMJJ_RS01080 0.29 +0.2 209,415 + MMJJ_RS01080 0.29 +0.4 209,415 + MMJJ_RS01080 0.29 -0.8 209,415 + MMJJ_RS01080 0.29 +0.6 209,442 - MMJJ_RS01080 0.34 -0.7 209,442 - MMJJ_RS01080 0.34 -0.6 209,442 - MMJJ_RS01080 0.34 +2.6 209,477 - MMJJ_RS01080 0.39 -0.6 209,478 + MMJJ_RS01080 0.40 -1.1 209,480 + MMJJ_RS01080 0.40 -0.8 209,480 + MMJJ_RS01080 0.40 +0.2 209,482 - MMJJ_RS01080 0.40 +0.1 209,483 + MMJJ_RS01080 0.40 -1.5 209,502 + MMJJ_RS01080 0.44 +1.2 209,551 - MMJJ_RS01080 0.52 -0.9 209,551 - MMJJ_RS01080 0.52 -0.9 209,551 - MMJJ_RS01080 0.52 -0.8 209,552 + MMJJ_RS01080 0.52 -1.0 209,553 - MMJJ_RS01080 0.52 -0.9 209,553 - MMJJ_RS01080 0.52 +0.1 209,571 - MMJJ_RS01080 0.55 +0.7 209,571 - MMJJ_RS01080 0.55 -0.9 209,571 - MMJJ_RS01080 0.55 +0.2 209,572 + MMJJ_RS01080 0.55 -0.2 209,634 - MMJJ_RS01080 0.66 +0.6 209,634 - MMJJ_RS01080 0.66 +0.4 209,664 - MMJJ_RS01080 0.71 -1.7 209,664 - MMJJ_RS01080 0.71 +0.2 209,665 + MMJJ_RS01080 0.71 -1.4 209,665 + MMJJ_RS01080 0.71 -0.1 209,665 + MMJJ_RS01080 0.71 -0.6 209,681 - MMJJ_RS01080 0.74 -0.3 209,685 - MMJJ_RS01080 0.75 +1.2 209,685 - MMJJ_RS01080 0.75 -0.8 209,685 - MMJJ_RS01080 0.75 -2.0 209,686 + MMJJ_RS01080 0.75 -0.4 209,686 + MMJJ_RS01080 0.75 -2.5 209,686 + MMJJ_RS01080 0.75 +1.2 209,686 + MMJJ_RS01080 0.75 +0.7 209,686 + MMJJ_RS01080 0.75 -3.2 209,687 - MMJJ_RS01080 0.75 +0.3 209,687 - MMJJ_RS01080 0.75 +1.1 209,688 + MMJJ_RS01080 0.75 -0.4 209,688 + MMJJ_RS01080 0.75 -0.3 209,688 + MMJJ_RS01080 0.75 -1.4 209,690 - MMJJ_RS01080 0.75 +1.7 209,690 - MMJJ_RS01080 0.75 +1.0 209,691 + MMJJ_RS01080 0.76 -0.7 209,691 + MMJJ_RS01080 0.76 -0.4 209,691 + MMJJ_RS01080 0.76 -1.7 209,691 + MMJJ_RS01080 0.76 +1.0 209,691 + MMJJ_RS01080 0.76 -0.7 209,691 + MMJJ_RS01080 0.76 -0.0 209,691 + MMJJ_RS01080 0.76 +0.3 209,691 + MMJJ_RS01080 0.76 -1.3 209,692 - MMJJ_RS01080 0.76 +2.4 209,692 - MMJJ_RS01080 0.76 +0.1 209,692 - MMJJ_RS01080 0.76 -0.6 209,692 - MMJJ_RS01080 0.76 +1.2 209,692 - MMJJ_RS01080 0.76 +0.4 209,692 - MMJJ_RS01080 0.76 +1.3 209,692 - MMJJ_RS01080 0.76 -0.8 209,692 - MMJJ_RS01080 0.76 -1.2 209,693 + MMJJ_RS01080 0.76 -0.1 209,693 + MMJJ_RS01080 0.76 -0.3 209,693 + MMJJ_RS01080 0.76 -1.1 209,693 + MMJJ_RS01080 0.76 -0.5 209,693 + MMJJ_RS01080 0.76 +0.3 209,693 + MMJJ_RS01080 0.76 -1.0 209,706 - MMJJ_RS01080 0.78 -1.0 209,716 - MMJJ_RS01080 0.80 -1.8 209,766 - -2.9 209,779 - +0.1 209,779 - -0.5 209,779 - -0.6 209,780 + +0.2 209,780 + +0.5 209,795 - +0.1 209,800 - -1.4 209,801 + -0.2 209,801 + -1.6 209,802 - -0.6 209,802 - -0.0 209,803 + +0.2 209,803 + -1.9 209,847 - MMJJ_RS01085 0.23 -1.9 209,847 - MMJJ_RS01085 0.23 -0.3 209,848 + MMJJ_RS01085 0.23 -1.3 209,848 + MMJJ_RS01085 0.23 -1.5 209,867 + MMJJ_RS01085 0.28 -2.4 209,961 + MMJJ_RS01085 0.54 -0.5 210,067 - MMJJ_RS01085 0.83 -1.0 210,101 - -1.1 210,160 - +1.0 210,196 - -0.7 210,408 + -0.8 210,410 + -1.5 210,412 + -1.0 210,428 - +1.2 210,428 - +0.7 210,429 + +2.3 210,447 - +0.6 210,459 - +0.8 210,461 - -0.7 210,461 - +1.0 210,461 - +1.8 210,490 + +0.6 210,501 + -0.6 210,517 - +1.4 210,761 - -1.8 210,762 + +0.4 210,762 + +1.8 210,762 + +0.1 210,805 - +0.9 210,806 + -0.7 210,823 - +0.1 210,824 + -1.7 210,831 - +3.2 210,832 + -1.6 210,848 - -0.7 210,849 + -1.8 210,853 - -1.4 210,858 + MMJJ_RS01090 0.10 -1.4 210,932 + MMJJ_RS01090 0.21 -1.1
Or see this region's nucleotide sequence