Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3750

Experiment: Sisomicin 0.12 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_3749 and Ga0059261_3750 are separated by 113 nucleotidesGa0059261_3750 and Ga0059261_3751 are separated by 37 nucleotides Ga0059261_3749: Ga0059261_3749 - protein translocase subunit secY/sec61 alpha, at 3,850,553 to 3,851,917 _3749 Ga0059261_3750: Ga0059261_3750 - Adenylate kinase (EC 2.7.4.3), at 3,852,031 to 3,852,678 _3750 Ga0059261_3751: Ga0059261_3751 - Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases, at 3,852,716 to 3,854,272 _3751 Position (kb) 3852 3853Strain fitness (log2 ratio) -1 0 1at 3852.676 kb on + strandat 3852.676 kb on + strandat 3852.676 kb on + strandat 3852.676 kb on + strandat 3852.676 kb on + strandat 3852.676 kb on + strandat 3852.676 kb on + strandat 3852.676 kb on + strandat 3852.676 kb on + strandat 3852.677 kb on - strandat 3852.677 kb on - strandat 3852.677 kb on - strandat 3852.677 kb on - strandat 3852.681 kb on + strandat 3852.681 kb on + strandat 3852.681 kb on + strandat 3852.682 kb on - strandat 3852.771 kb on + strandat 3852.771 kb on + strandat 3852.771 kb on + strandat 3852.771 kb on + strandat 3852.772 kb on - strandat 3852.772 kb on - strandat 3852.772 kb on - strandat 3852.772 kb on - strandat 3852.772 kb on - strandat 3852.772 kb on - strandat 3852.812 kb on - strandat 3852.930 kb on + strand, within Ga0059261_3751at 3852.930 kb on + strand, within Ga0059261_3751at 3852.930 kb on + strand, within Ga0059261_3751at 3852.930 kb on + strand, within Ga0059261_3751at 3852.930 kb on + strand, within Ga0059261_3751at 3852.930 kb on + strand, within Ga0059261_3751at 3852.931 kb on - strand, within Ga0059261_3751at 3852.931 kb on - strand, within Ga0059261_3751at 3852.931 kb on - strand, within Ga0059261_3751at 3852.931 kb on - strandat 3852.931 kb on - strand, within Ga0059261_3751at 3852.931 kb on - strand, within Ga0059261_3751at 3852.931 kb on - strand, within Ga0059261_3751at 3852.931 kb on - strand, within Ga0059261_3751at 3852.931 kb on - strand, within Ga0059261_3751at 3852.931 kb on - strand, within Ga0059261_3751at 3852.931 kb on - strand, within Ga0059261_3751at 3852.931 kb on - strand, within Ga0059261_3751at 3852.931 kb on - strand, within Ga0059261_3751at 3852.931 kb on - strand, within Ga0059261_3751at 3853.023 kb on + strand, within Ga0059261_3751at 3853.053 kb on + strand, within Ga0059261_3751at 3853.053 kb on + strand, within Ga0059261_3751at 3853.053 kb on + strand, within Ga0059261_3751at 3853.053 kb on + strand, within Ga0059261_3751at 3853.053 kb on + strand, within Ga0059261_3751at 3853.054 kb on - strand, within Ga0059261_3751at 3853.054 kb on - strand, within Ga0059261_3751at 3853.054 kb on - strand, within Ga0059261_3751at 3853.054 kb on - strand, within Ga0059261_3751at 3853.054 kb on - strand, within Ga0059261_3751at 3853.111 kb on - strand, within Ga0059261_3751at 3853.111 kb on - strandat 3853.111 kb on - strand, within Ga0059261_3751at 3853.111 kb on - strand, within Ga0059261_3751at 3853.111 kb on - strand, within Ga0059261_3751at 3853.170 kb on + strand, within Ga0059261_3751at 3853.170 kb on + strand, within Ga0059261_3751at 3853.170 kb on + strand, within Ga0059261_3751at 3853.171 kb on - strand, within Ga0059261_3751at 3853.171 kb on - strand, within Ga0059261_3751at 3853.171 kb on - strand, within Ga0059261_3751at 3853.171 kb on - strand, within Ga0059261_3751

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.12 mg/ml
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3,852,676 + +0.2
3,852,676 + +0.7
3,852,676 + +0.4
3,852,676 + -1.7
3,852,676 + -0.4
3,852,676 + -0.5
3,852,676 + -0.7
3,852,676 + -0.3
3,852,676 + +0.1
3,852,677 - +1.4
3,852,677 - +0.4
3,852,677 - +0.4
3,852,677 - -0.8
3,852,681 + -0.2
3,852,681 + -0.6
3,852,681 + -0.1
3,852,682 - -0.1
3,852,771 + +0.1
3,852,771 + -0.6
3,852,771 + +0.3
3,852,771 + +0.3
3,852,772 - +0.3
3,852,772 - -0.5
3,852,772 - -0.0
3,852,772 - +0.3
3,852,772 - +1.1
3,852,772 - -0.2
3,852,812 - +0.0
3,852,930 + Ga0059261_3751 0.14 +0.0
3,852,930 + Ga0059261_3751 0.14 -0.6
3,852,930 + Ga0059261_3751 0.14 +0.4
3,852,930 + Ga0059261_3751 0.14 +0.6
3,852,930 + Ga0059261_3751 0.14 -1.4
3,852,930 + Ga0059261_3751 0.14 +0.1
3,852,931 - Ga0059261_3751 0.14 +0.0
3,852,931 - Ga0059261_3751 0.14 +0.6
3,852,931 - Ga0059261_3751 0.14 +0.1
3,852,931 - +1.7
3,852,931 - Ga0059261_3751 0.14 -0.2
3,852,931 - Ga0059261_3751 0.14 +0.2
3,852,931 - Ga0059261_3751 0.14 +0.4
3,852,931 - Ga0059261_3751 0.14 -0.1
3,852,931 - Ga0059261_3751 0.14 +1.3
3,852,931 - Ga0059261_3751 0.14 +0.1
3,852,931 - Ga0059261_3751 0.14 +0.5
3,852,931 - Ga0059261_3751 0.14 -0.0
3,852,931 - Ga0059261_3751 0.14 -0.1
3,852,931 - Ga0059261_3751 0.14 -0.6
3,853,023 + Ga0059261_3751 0.20 -0.5
3,853,053 + Ga0059261_3751 0.22 +0.1
3,853,053 + Ga0059261_3751 0.22 -0.0
3,853,053 + Ga0059261_3751 0.22 +0.5
3,853,053 + Ga0059261_3751 0.22 -0.4
3,853,053 + Ga0059261_3751 0.22 -0.7
3,853,054 - Ga0059261_3751 0.22 +1.0
3,853,054 - Ga0059261_3751 0.22 +0.6
3,853,054 - Ga0059261_3751 0.22 +0.3
3,853,054 - Ga0059261_3751 0.22 -0.0
3,853,054 - Ga0059261_3751 0.22 -0.2
3,853,111 - Ga0059261_3751 0.25 -0.3
3,853,111 - +1.7
3,853,111 - Ga0059261_3751 0.25 -0.1
3,853,111 - Ga0059261_3751 0.25 -0.9
3,853,111 - Ga0059261_3751 0.25 -1.0
3,853,170 + Ga0059261_3751 0.29 +0.7
3,853,170 + Ga0059261_3751 0.29 -0.9
3,853,170 + Ga0059261_3751 0.29 -1.2
3,853,171 - Ga0059261_3751 0.29 +0.4
3,853,171 - Ga0059261_3751 0.29 +0.1
3,853,171 - Ga0059261_3751 0.29 -0.5
3,853,171 - Ga0059261_3751 0.29 -0.1

Or see this region's nucleotide sequence