Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_2519

Experiment: Sisomicin 0.12 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_2518 and Ga0059261_2519 are separated by 188 nucleotidesGa0059261_2519 and Ga0059261_2520 are separated by 49 nucleotidesGa0059261_2520 and Ga0059261_2521 are separated by 22 nucleotides Ga0059261_2518: Ga0059261_2518 - Metal-dependent hydrolase, at 2,609,913 to 2,610,725 _2518 Ga0059261_2519: Ga0059261_2519 - aspartate kinase (EC 2.7.2.4), at 2,610,914 to 2,612,173 _2519 Ga0059261_2520: Ga0059261_2520 - 3-demethylubiquinone-9 3-methyltransferase (EC 2.1.1.64), at 2,612,223 to 2,612,960 _2520 Ga0059261_2521: Ga0059261_2521 - hypothetical protein, at 2,612,983 to 2,613,543 _2521 Position (kb) 2610 2611 2612 2613Strain fitness (log2 ratio) -1 0 1 2at 2609.925 kb on - strandat 2609.999 kb on + strand, within Ga0059261_2518at 2610.186 kb on + strand, within Ga0059261_2518at 2610.186 kb on + strand, within Ga0059261_2518at 2610.186 kb on + strand, within Ga0059261_2518at 2610.186 kb on + strand, within Ga0059261_2518at 2610.186 kb on + strand, within Ga0059261_2518at 2610.186 kb on + strand, within Ga0059261_2518at 2610.187 kb on - strand, within Ga0059261_2518at 2610.187 kb on - strand, within Ga0059261_2518at 2610.187 kb on - strand, within Ga0059261_2518at 2610.187 kb on - strand, within Ga0059261_2518at 2610.188 kb on + strand, within Ga0059261_2518at 2610.188 kb on + strand, within Ga0059261_2518at 2610.188 kb on + strand, within Ga0059261_2518at 2610.189 kb on - strand, within Ga0059261_2518at 2610.306 kb on + strand, within Ga0059261_2518at 2610.307 kb on - strand, within Ga0059261_2518at 2610.307 kb on - strand, within Ga0059261_2518at 2610.307 kb on - strand, within Ga0059261_2518at 2610.307 kb on - strand, within Ga0059261_2518at 2610.356 kb on + strand, within Ga0059261_2518at 2610.357 kb on - strandat 2610.560 kb on + strand, within Ga0059261_2518at 2610.560 kb on + strand, within Ga0059261_2518at 2610.560 kb on + strand, within Ga0059261_2518at 2610.560 kb on + strand, within Ga0059261_2518at 2610.561 kb on - strand, within Ga0059261_2518at 2610.561 kb on - strand, within Ga0059261_2518at 2610.561 kb on - strand, within Ga0059261_2518at 2610.561 kb on - strand, within Ga0059261_2518at 2610.561 kb on - strand, within Ga0059261_2518at 2610.561 kb on - strand, within Ga0059261_2518at 2610.561 kb on - strand, within Ga0059261_2518at 2610.561 kb on - strand, within Ga0059261_2518at 2610.605 kb on + strand, within Ga0059261_2518at 2610.605 kb on + strand, within Ga0059261_2518at 2610.605 kb on + strand, within Ga0059261_2518at 2610.605 kb on + strand, within Ga0059261_2518at 2610.605 kb on + strand, within Ga0059261_2518at 2610.605 kb on + strand, within Ga0059261_2518at 2610.605 kb on + strand, within Ga0059261_2518at 2610.606 kb on - strand, within Ga0059261_2518at 2610.606 kb on - strand, within Ga0059261_2518at 2610.606 kb on - strand, within Ga0059261_2518at 2610.606 kb on - strand, within Ga0059261_2518at 2610.606 kb on - strand, within Ga0059261_2518at 2610.606 kb on - strand, within Ga0059261_2518at 2610.606 kb on - strand, within Ga0059261_2518at 2610.606 kb on - strand, within Ga0059261_2518at 2610.745 kb on + strandat 2610.745 kb on + strandat 2610.745 kb on + strandat 2610.746 kb on - strandat 2610.746 kb on - strandat 2610.746 kb on - strandat 2610.820 kb on + strandat 2610.820 kb on + strandat 2610.820 kb on + strandat 2610.820 kb on + strandat 2610.820 kb on + strandat 2610.820 kb on + strandat 2610.820 kb on + strandat 2610.820 kb on + strandat 2610.820 kb on + strandat 2610.820 kb on + strandat 2610.820 kb on + strandat 2610.821 kb on - strandat 2610.821 kb on - strandat 2610.821 kb on - strandat 2610.821 kb on - strandat 2610.821 kb on - strandat 2610.821 kb on - strandat 2610.821 kb on - strandat 2610.821 kb on - strandat 2610.821 kb on - strandat 2610.821 kb on - strandat 2610.821 kb on - strandat 2610.821 kb on - strandat 2610.821 kb on - strandat 2610.883 kb on + strandat 2610.883 kb on + strandat 2610.883 kb on + strandat 2610.883 kb on + strandat 2610.883 kb on + strandat 2610.883 kb on + strandat 2610.883 kb on + strandat 2610.883 kb on + strandat 2610.883 kb on + strandat 2610.883 kb on + strandat 2610.883 kb on + strandat 2610.883 kb on + strandat 2610.883 kb on + strandat 2610.883 kb on + strandat 2610.884 kb on - strandat 2610.884 kb on - strandat 2610.884 kb on - strandat 2610.884 kb on - strandat 2610.884 kb on - strandat 2610.884 kb on - strandat 2610.884 kb on - strandat 2610.884 kb on - strandat 2610.884 kb on - strandat 2610.915 kb on + strandat 2610.949 kb on - strandat 2610.949 kb on - strandat 2610.956 kb on - strandat 2612.212 kb on - strandat 2613.015 kb on + strandat 2613.015 kb on + strandat 2613.015 kb on + strandat 2613.015 kb on + strandat 2613.016 kb on - strandat 2613.133 kb on + strand, within Ga0059261_2521at 2613.133 kb on + strand, within Ga0059261_2521at 2613.133 kb on + strand, within Ga0059261_2521at 2613.133 kb on + strand, within Ga0059261_2521at 2613.134 kb on - strand, within Ga0059261_2521at 2613.134 kb on - strand, within Ga0059261_2521

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.12 mg/ml
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2,609,925 - +0.9
2,609,999 + Ga0059261_2518 0.11 -0.1
2,610,186 + Ga0059261_2518 0.34 +0.2
2,610,186 + Ga0059261_2518 0.34 -0.1
2,610,186 + Ga0059261_2518 0.34 -0.3
2,610,186 + Ga0059261_2518 0.34 -0.0
2,610,186 + Ga0059261_2518 0.34 -0.8
2,610,186 + Ga0059261_2518 0.34 +0.4
2,610,187 - Ga0059261_2518 0.34 -1.1
2,610,187 - Ga0059261_2518 0.34 +0.5
2,610,187 - Ga0059261_2518 0.34 +0.5
2,610,187 - Ga0059261_2518 0.34 -0.1
2,610,188 + Ga0059261_2518 0.34 +0.3
2,610,188 + Ga0059261_2518 0.34 -0.0
2,610,188 + Ga0059261_2518 0.34 -1.6
2,610,189 - Ga0059261_2518 0.34 +0.3
2,610,306 + Ga0059261_2518 0.48 -0.2
2,610,307 - Ga0059261_2518 0.48 +0.3
2,610,307 - Ga0059261_2518 0.48 -0.4
2,610,307 - Ga0059261_2518 0.48 -0.6
2,610,307 - Ga0059261_2518 0.48 +1.4
2,610,356 + Ga0059261_2518 0.54 +0.0
2,610,357 - +1.0
2,610,560 + Ga0059261_2518 0.80 +0.3
2,610,560 + Ga0059261_2518 0.80 -0.2
2,610,560 + Ga0059261_2518 0.80 -0.4
2,610,560 + Ga0059261_2518 0.80 +1.1
2,610,561 - Ga0059261_2518 0.80 +0.7
2,610,561 - Ga0059261_2518 0.80 -0.1
2,610,561 - Ga0059261_2518 0.80 +0.3
2,610,561 - Ga0059261_2518 0.80 +0.6
2,610,561 - Ga0059261_2518 0.80 -0.8
2,610,561 - Ga0059261_2518 0.80 +0.3
2,610,561 - Ga0059261_2518 0.80 +0.2
2,610,561 - Ga0059261_2518 0.80 -0.4
2,610,605 + Ga0059261_2518 0.85 +1.2
2,610,605 + Ga0059261_2518 0.85 +0.9
2,610,605 + Ga0059261_2518 0.85 -0.0
2,610,605 + Ga0059261_2518 0.85 -0.3
2,610,605 + Ga0059261_2518 0.85 +0.1
2,610,605 + Ga0059261_2518 0.85 +0.0
2,610,605 + Ga0059261_2518 0.85 -0.4
2,610,606 - Ga0059261_2518 0.85 +0.4
2,610,606 - Ga0059261_2518 0.85 -0.9
2,610,606 - Ga0059261_2518 0.85 +0.4
2,610,606 - Ga0059261_2518 0.85 -0.1
2,610,606 - Ga0059261_2518 0.85 +0.1
2,610,606 - Ga0059261_2518 0.85 +0.9
2,610,606 - Ga0059261_2518 0.85 +0.3
2,610,606 - Ga0059261_2518 0.85 +0.1
2,610,745 + +0.0
2,610,745 + +0.3
2,610,745 + -0.4
2,610,746 - -1.4
2,610,746 - -0.2
2,610,746 - -0.1
2,610,820 + +0.8
2,610,820 + +0.4
2,610,820 + +0.6
2,610,820 + +0.8
2,610,820 + +0.7
2,610,820 + -0.2
2,610,820 + -0.3
2,610,820 + -0.3
2,610,820 + +0.4
2,610,820 + +0.4
2,610,820 + -0.5
2,610,821 - -0.1
2,610,821 - +1.9
2,610,821 - +0.9
2,610,821 - -0.4
2,610,821 - +0.4
2,610,821 - +0.1
2,610,821 - +0.4
2,610,821 - +0.4
2,610,821 - -0.6
2,610,821 - -0.4
2,610,821 - +0.3
2,610,821 - -0.1
2,610,821 - -0.6
2,610,883 + -0.9
2,610,883 + -0.2
2,610,883 + -0.2
2,610,883 + -0.0
2,610,883 + -0.3
2,610,883 + -0.1
2,610,883 + -0.4
2,610,883 + +0.1
2,610,883 + +0.0
2,610,883 + -0.6
2,610,883 + +0.7
2,610,883 + -0.6
2,610,883 + -0.1
2,610,883 + -0.7
2,610,884 - +1.8
2,610,884 - +0.0
2,610,884 - -1.1
2,610,884 - +0.3
2,610,884 - +0.7
2,610,884 - +0.1
2,610,884 - +0.3
2,610,884 - -1.0
2,610,884 - -0.1
2,610,915 + +0.2
2,610,949 - -0.6
2,610,949 - +0.1
2,610,956 - +0.8
2,612,212 - -0.2
2,613,015 + -0.8
2,613,015 + +0.5
2,613,015 + +0.6
2,613,015 + -1.0
2,613,016 - +0.3
2,613,133 + Ga0059261_2521 0.27 -0.1
2,613,133 + Ga0059261_2521 0.27 -0.4
2,613,133 + Ga0059261_2521 0.27 +0.5
2,613,133 + Ga0059261_2521 0.27 +0.6
2,613,134 - Ga0059261_2521 0.27 -0.3
2,613,134 - Ga0059261_2521 0.27 +1.1

Or see this region's nucleotide sequence