Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0881

Experiment: Sisomicin 0.12 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0879 and Ga0059261_0880 are separated by 47 nucleotidesGa0059261_0880 and Ga0059261_0881 are separated by 32 nucleotidesGa0059261_0881 and Ga0059261_0882 are separated by 160 nucleotides Ga0059261_0879: Ga0059261_0879 - ribosomal RNA small subunit methyltransferase A, at 920,433 to 921,251 _0879 Ga0059261_0880: Ga0059261_0880 - Tetratricopeptide repeat, at 921,299 to 921,805 _0880 Ga0059261_0881: Ga0059261_0881 - tRNA and rRNA cytosine-C5-methylases, at 921,838 to 923,022 _0881 Ga0059261_0882: Ga0059261_0882 - Predicted membrane protein, at 923,183 to 924,352 _0882 Position (kb) 921 922 923 924Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 920.922 kb on + strandat 920.923 kb on - strand, within Ga0059261_0879at 921.032 kb on + strand, within Ga0059261_0879at 921.032 kb on + strand, within Ga0059261_0879at 921.032 kb on + strand, within Ga0059261_0879at 921.032 kb on + strand, within Ga0059261_0879at 921.033 kb on - strand, within Ga0059261_0879at 921.033 kb on - strand, within Ga0059261_0879at 921.033 kb on - strand, within Ga0059261_0879at 921.033 kb on - strand, within Ga0059261_0879at 921.205 kb on + strandat 921.249 kb on + strandat 921.249 kb on + strandat 921.250 kb on - strandat 921.250 kb on - strandat 921.250 kb on - strandat 921.269 kb on - strandat 921.300 kb on + strandat 921.300 kb on + strandat 921.300 kb on + strandat 921.300 kb on + strandat 921.300 kb on + strandat 921.300 kb on + strandat 921.300 kb on + strandat 921.300 kb on + strandat 921.300 kb on + strandat 921.300 kb on + strandat 921.301 kb on - strandat 921.301 kb on - strandat 921.301 kb on - strandat 921.301 kb on - strandat 921.534 kb on + strand, within Ga0059261_0880at 921.534 kb on + strand, within Ga0059261_0880at 921.534 kb on + strand, within Ga0059261_0880at 921.535 kb on - strand, within Ga0059261_0880at 921.535 kb on - strand, within Ga0059261_0880at 921.535 kb on - strand, within Ga0059261_0880at 921.535 kb on - strand, within Ga0059261_0880at 921.593 kb on - strand, within Ga0059261_0880at 921.593 kb on - strand, within Ga0059261_0880at 921.594 kb on + strand, within Ga0059261_0880at 921.594 kb on + strand, within Ga0059261_0880at 921.594 kb on + strand, within Ga0059261_0880at 921.594 kb on + strand, within Ga0059261_0880at 921.594 kb on + strand, within Ga0059261_0880at 921.594 kb on + strand, within Ga0059261_0880at 921.594 kb on + strand, within Ga0059261_0880at 921.594 kb on + strand, within Ga0059261_0880at 921.594 kb on + strand, within Ga0059261_0880at 921.595 kb on - strand, within Ga0059261_0880at 921.595 kb on - strandat 921.595 kb on - strand, within Ga0059261_0880at 921.595 kb on - strand, within Ga0059261_0880at 921.799 kb on + strandat 921.799 kb on + strandat 921.799 kb on + strandat 921.800 kb on - strandat 921.800 kb on - strandat 921.800 kb on - strandat 921.800 kb on - strandat 921.821 kb on + strandat 921.821 kb on + strandat 921.822 kb on - strandat 921.822 kb on - strandat 921.822 kb on - strandat 921.836 kb on + strandat 921.836 kb on + strandat 921.836 kb on + strandat 921.836 kb on + strandat 921.837 kb on - strandat 921.837 kb on - strandat 921.837 kb on - strandat 922.018 kb on + strand, within Ga0059261_0881at 922.018 kb on + strand, within Ga0059261_0881at 922.018 kb on + strand, within Ga0059261_0881at 922.018 kb on + strand, within Ga0059261_0881at 922.018 kb on + strand, within Ga0059261_0881at 922.018 kb on + strand, within Ga0059261_0881at 922.018 kb on + strand, within Ga0059261_0881at 922.018 kb on + strand, within Ga0059261_0881at 922.018 kb on + strand, within Ga0059261_0881at 922.018 kb on + strand, within Ga0059261_0881at 922.018 kb on + strand, within Ga0059261_0881at 922.018 kb on + strand, within Ga0059261_0881at 922.019 kb on - strand, within Ga0059261_0881at 922.019 kb on - strand, within Ga0059261_0881at 922.019 kb on - strand, within Ga0059261_0881at 922.019 kb on - strand, within Ga0059261_0881at 922.019 kb on - strand, within Ga0059261_0881at 922.019 kb on - strand, within Ga0059261_0881at 922.019 kb on - strand, within Ga0059261_0881at 922.019 kb on - strand, within Ga0059261_0881at 922.484 kb on + strand, within Ga0059261_0881at 922.484 kb on + strand, within Ga0059261_0881at 922.485 kb on - strand, within Ga0059261_0881at 922.485 kb on - strand, within Ga0059261_0881at 922.485 kb on - strand, within Ga0059261_0881at 922.752 kb on - strandat 922.752 kb on - strand, within Ga0059261_0881at 922.902 kb on - strandat 922.902 kb on - strand, within Ga0059261_0881at 923.004 kb on + strandat 923.142 kb on + strandat 923.143 kb on - strandat 923.357 kb on + strand, within Ga0059261_0882at 923.357 kb on + strand, within Ga0059261_0882at 923.420 kb on + strand, within Ga0059261_0882at 923.420 kb on + strand, within Ga0059261_0882at 923.420 kb on + strand, within Ga0059261_0882at 923.421 kb on - strand, within Ga0059261_0882at 923.421 kb on - strand, within Ga0059261_0882at 923.421 kb on - strandat 923.421 kb on - strand, within Ga0059261_0882at 923.421 kb on - strand, within Ga0059261_0882at 923.421 kb on - strand, within Ga0059261_0882at 923.461 kb on + strand, within Ga0059261_0882at 923.461 kb on + strand, within Ga0059261_0882at 923.461 kb on + strand, within Ga0059261_0882at 923.462 kb on - strand, within Ga0059261_0882at 923.462 kb on - strand, within Ga0059261_0882at 923.462 kb on - strand, within Ga0059261_0882at 923.544 kb on - strand, within Ga0059261_0882at 923.544 kb on - strand, within Ga0059261_0882at 923.544 kb on - strand, within Ga0059261_0882at 923.547 kb on + strand, within Ga0059261_0882at 923.574 kb on + strand, within Ga0059261_0882at 923.627 kb on + strand, within Ga0059261_0882at 923.628 kb on - strand, within Ga0059261_0882at 923.657 kb on + strand, within Ga0059261_0882at 923.657 kb on + strand, within Ga0059261_0882at 923.657 kb on + strand, within Ga0059261_0882at 923.657 kb on + strand, within Ga0059261_0882at 923.657 kb on + strand, within Ga0059261_0882at 923.657 kb on + strand, within Ga0059261_0882at 923.658 kb on - strand, within Ga0059261_0882at 923.672 kb on + strand, within Ga0059261_0882at 923.673 kb on - strand, within Ga0059261_0882at 923.673 kb on - strand, within Ga0059261_0882at 923.673 kb on - strand, within Ga0059261_0882at 923.731 kb on + strand, within Ga0059261_0882at 923.794 kb on + strand, within Ga0059261_0882at 923.794 kb on + strand, within Ga0059261_0882at 923.794 kb on + strand, within Ga0059261_0882at 923.794 kb on + strand, within Ga0059261_0882at 923.794 kb on + strand, within Ga0059261_0882at 923.795 kb on - strand, within Ga0059261_0882at 923.795 kb on - strand, within Ga0059261_0882at 923.795 kb on - strand, within Ga0059261_0882at 923.795 kb on - strand, within Ga0059261_0882at 923.795 kb on - strand, within Ga0059261_0882at 923.795 kb on - strand, within Ga0059261_0882at 923.795 kb on - strand, within Ga0059261_0882at 923.795 kb on - strand, within Ga0059261_0882at 923.795 kb on - strand, within Ga0059261_0882at 923.908 kb on + strand, within Ga0059261_0882at 923.909 kb on - strand, within Ga0059261_0882at 923.954 kb on + strand, within Ga0059261_0882at 923.955 kb on - strand, within Ga0059261_0882at 923.955 kb on - strand, within Ga0059261_0882at 924.015 kb on - strand, within Ga0059261_0882at 924.022 kb on + strand, within Ga0059261_0882at 924.022 kb on + strand, within Ga0059261_0882at 924.022 kb on + strand, within Ga0059261_0882at 924.022 kb on + strand, within Ga0059261_0882at 924.022 kb on + strand, within Ga0059261_0882at 924.022 kb on + strand, within Ga0059261_0882at 924.022 kb on + strand, within Ga0059261_0882

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.12 mg/ml
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920,922 + +1.1
920,923 - Ga0059261_0879 0.60 -2.0
921,032 + Ga0059261_0879 0.73 -2.8
921,032 + Ga0059261_0879 0.73 -1.9
921,032 + Ga0059261_0879 0.73 -2.6
921,032 + Ga0059261_0879 0.73 -1.5
921,033 - Ga0059261_0879 0.73 -1.2
921,033 - Ga0059261_0879 0.73 -2.3
921,033 - Ga0059261_0879 0.73 -0.9
921,033 - Ga0059261_0879 0.73 -0.6
921,205 + +0.5
921,249 + -0.0
921,249 + -0.9
921,250 - -0.2
921,250 - +0.5
921,250 - +0.4
921,269 - -0.2
921,300 + -0.6
921,300 + +0.8
921,300 + -0.0
921,300 + +0.2
921,300 + +0.4
921,300 + -0.9
921,300 + -0.6
921,300 + +0.2
921,300 + -0.2
921,300 + -0.6
921,301 - -0.3
921,301 - -0.3
921,301 - -0.0
921,301 - -0.5
921,534 + Ga0059261_0880 0.46 -0.6
921,534 + Ga0059261_0880 0.46 -0.2
921,534 + Ga0059261_0880 0.46 +0.6
921,535 - Ga0059261_0880 0.47 +1.0
921,535 - Ga0059261_0880 0.47 -1.3
921,535 - Ga0059261_0880 0.47 -0.2
921,535 - Ga0059261_0880 0.47 +0.3
921,593 - Ga0059261_0880 0.58 -1.7
921,593 - Ga0059261_0880 0.58 -2.1
921,594 + Ga0059261_0880 0.58 +0.2
921,594 + Ga0059261_0880 0.58 -0.5
921,594 + Ga0059261_0880 0.58 -1.9
921,594 + Ga0059261_0880 0.58 -1.1
921,594 + Ga0059261_0880 0.58 -0.6
921,594 + Ga0059261_0880 0.58 +0.5
921,594 + Ga0059261_0880 0.58 -0.7
921,594 + Ga0059261_0880 0.58 -0.7
921,594 + Ga0059261_0880 0.58 -1.3
921,595 - Ga0059261_0880 0.58 -1.0
921,595 - -0.9
921,595 - Ga0059261_0880 0.58 -0.2
921,595 - Ga0059261_0880 0.58 +0.1
921,799 + +0.9
921,799 + -1.0
921,799 + -0.3
921,800 - -0.7
921,800 - +0.5
921,800 - +0.4
921,800 - +0.8
921,821 + +1.0
921,821 + +0.9
921,822 - +0.1
921,822 - -0.9
921,822 - -1.0
921,836 + -0.6
921,836 + -0.9
921,836 + -0.7
921,836 + +1.1
921,837 - -0.8
921,837 - +0.1
921,837 - -0.2
922,018 + Ga0059261_0881 0.15 -0.1
922,018 + Ga0059261_0881 0.15 +0.2
922,018 + Ga0059261_0881 0.15 +0.3
922,018 + Ga0059261_0881 0.15 -0.5
922,018 + Ga0059261_0881 0.15 +0.1
922,018 + Ga0059261_0881 0.15 -0.4
922,018 + Ga0059261_0881 0.15 +0.4
922,018 + Ga0059261_0881 0.15 +0.2
922,018 + Ga0059261_0881 0.15 -0.3
922,018 + Ga0059261_0881 0.15 +0.4
922,018 + Ga0059261_0881 0.15 -0.4
922,018 + Ga0059261_0881 0.15 -0.1
922,019 - Ga0059261_0881 0.15 -0.2
922,019 - Ga0059261_0881 0.15 -0.2
922,019 - Ga0059261_0881 0.15 -0.3
922,019 - Ga0059261_0881 0.15 -0.5
922,019 - Ga0059261_0881 0.15 -0.1
922,019 - Ga0059261_0881 0.15 -0.3
922,019 - Ga0059261_0881 0.15 +0.8
922,019 - Ga0059261_0881 0.15 +0.3
922,484 + Ga0059261_0881 0.55 +0.9
922,484 + Ga0059261_0881 0.55 +0.6
922,485 - Ga0059261_0881 0.55 +0.5
922,485 - Ga0059261_0881 0.55 +2.0
922,485 - Ga0059261_0881 0.55 -0.3
922,752 - +0.1
922,752 - Ga0059261_0881 0.77 +0.3
922,902 - -0.5
922,902 - Ga0059261_0881 0.90 +0.4
923,004 + +0.1
923,142 + -0.3
923,143 - -0.2
923,357 + Ga0059261_0882 0.15 -0.1
923,357 + Ga0059261_0882 0.15 -0.3
923,420 + Ga0059261_0882 0.20 +1.1
923,420 + Ga0059261_0882 0.20 +1.1
923,420 + Ga0059261_0882 0.20 +0.1
923,421 - Ga0059261_0882 0.20 -0.6
923,421 - Ga0059261_0882 0.20 -0.9
923,421 - -1.5
923,421 - Ga0059261_0882 0.20 +0.1
923,421 - Ga0059261_0882 0.20 +0.4
923,421 - Ga0059261_0882 0.20 +1.9
923,461 + Ga0059261_0882 0.24 +0.1
923,461 + Ga0059261_0882 0.24 +0.6
923,461 + Ga0059261_0882 0.24 -0.9
923,462 - Ga0059261_0882 0.24 -0.1
923,462 - Ga0059261_0882 0.24 -0.5
923,462 - Ga0059261_0882 0.24 -1.3
923,544 - Ga0059261_0882 0.31 +0.0
923,544 - Ga0059261_0882 0.31 -0.2
923,544 - Ga0059261_0882 0.31 -0.0
923,547 + Ga0059261_0882 0.31 -0.1
923,574 + Ga0059261_0882 0.33 +0.3
923,627 + Ga0059261_0882 0.38 +0.2
923,628 - Ga0059261_0882 0.38 -0.0
923,657 + Ga0059261_0882 0.41 -1.2
923,657 + Ga0059261_0882 0.41 -0.0
923,657 + Ga0059261_0882 0.41 -0.0
923,657 + Ga0059261_0882 0.41 +0.5
923,657 + Ga0059261_0882 0.41 +1.7
923,657 + Ga0059261_0882 0.41 +0.1
923,658 - Ga0059261_0882 0.41 +0.4
923,672 + Ga0059261_0882 0.42 +0.0
923,673 - Ga0059261_0882 0.42 +0.4
923,673 - Ga0059261_0882 0.42 +0.1
923,673 - Ga0059261_0882 0.42 +0.3
923,731 + Ga0059261_0882 0.47 +0.9
923,794 + Ga0059261_0882 0.52 +0.6
923,794 + Ga0059261_0882 0.52 -0.5
923,794 + Ga0059261_0882 0.52 +0.1
923,794 + Ga0059261_0882 0.52 -0.6
923,794 + Ga0059261_0882 0.52 +0.3
923,795 - Ga0059261_0882 0.52 +0.2
923,795 - Ga0059261_0882 0.52 -0.2
923,795 - Ga0059261_0882 0.52 +0.1
923,795 - Ga0059261_0882 0.52 -0.9
923,795 - Ga0059261_0882 0.52 +0.0
923,795 - Ga0059261_0882 0.52 +0.2
923,795 - Ga0059261_0882 0.52 +0.8
923,795 - Ga0059261_0882 0.52 -0.2
923,795 - Ga0059261_0882 0.52 -0.6
923,908 + Ga0059261_0882 0.62 -0.7
923,909 - Ga0059261_0882 0.62 -0.0
923,954 + Ga0059261_0882 0.66 -0.5
923,955 - Ga0059261_0882 0.66 +0.5
923,955 - Ga0059261_0882 0.66 -0.1
924,015 - Ga0059261_0882 0.71 +0.5
924,022 + Ga0059261_0882 0.72 -0.5
924,022 + Ga0059261_0882 0.72 -0.2
924,022 + Ga0059261_0882 0.72 -0.2
924,022 + Ga0059261_0882 0.72 -1.3
924,022 + Ga0059261_0882 0.72 +0.1
924,022 + Ga0059261_0882 0.72 -0.1
924,022 + Ga0059261_0882 0.72 +0.1

Or see this region's nucleotide sequence