Experiment: Sisomicin 0.12 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0821 and Ga0059261_0822 are separated by 2 nucleotides Ga0059261_0822 and Ga0059261_0823 are separated by 4 nucleotides Ga0059261_0823 and Ga0059261_0824 are separated by 94 nucleotides Ga0059261_0824 and Ga0059261_0825 are separated by 105 nucleotides
Ga0059261_0821: Ga0059261_0821 - hypothetical protein, at 863,434 to 863,886
_0821
Ga0059261_0822: Ga0059261_0822 - Holliday junction endonuclease RuvC (EC 3.1.22.4), at 863,889 to 864,374
_0822
Ga0059261_0823: Ga0059261_0823 - hypothetical protein, at 864,379 to 864,885
_0823
Ga0059261_0824: Ga0059261_0824 - DNA-binding regulatory protein, YebC/PmpR family, at 864,980 to 865,723
_0824
Ga0059261_0825: Ga0059261_0825 - Uncharacterized conserved protein, at 865,829 to 866,155
_0825
Position (kb) 864
865 Strain fitness (log2 ratio) -2
-1
0
1
2 at 863.419 kb on - strand at 863.428 kb on + strand at 863.428 kb on + strand at 863.429 kb on - strand at 863.471 kb on + strand at 863.471 kb on + strand at 863.471 kb on + strand at 863.472 kb on - strand at 863.553 kb on + strand, within Ga0059261_0821 at 863.648 kb on + strand, within Ga0059261_0821 at 863.648 kb on + strand, within Ga0059261_0821 at 863.648 kb on + strand, within Ga0059261_0821 at 863.648 kb on + strand, within Ga0059261_0821 at 863.648 kb on + strand, within Ga0059261_0821 at 863.648 kb on + strand, within Ga0059261_0821 at 863.649 kb on - strand, within Ga0059261_0821 at 863.649 kb on - strand, within Ga0059261_0821 at 863.649 kb on - strand, within Ga0059261_0821 at 863.650 kb on + strand, within Ga0059261_0821 at 863.650 kb on + strand, within Ga0059261_0821 at 863.651 kb on - strand, within Ga0059261_0821 at 863.651 kb on - strand, within Ga0059261_0821 at 863.651 kb on - strand, within Ga0059261_0821 at 863.651 kb on - strand, within Ga0059261_0821 at 863.809 kb on - strand, within Ga0059261_0821 at 863.809 kb on - strand, within Ga0059261_0821 at 863.891 kb on - strand at 864.383 kb on + strand at 864.383 kb on + strand at 864.384 kb on - strand at 864.384 kb on - strand at 864.432 kb on + strand, within Ga0059261_0823 at 864.566 kb on + strand, within Ga0059261_0823 at 864.566 kb on + strand, within Ga0059261_0823 at 864.566 kb on + strand, within Ga0059261_0823 at 864.566 kb on + strand, within Ga0059261_0823 at 864.566 kb on + strand, within Ga0059261_0823 at 864.566 kb on + strand, within Ga0059261_0823 at 864.566 kb on + strand, within Ga0059261_0823 at 864.566 kb on + strand, within Ga0059261_0823 at 864.566 kb on + strand, within Ga0059261_0823 at 864.566 kb on + strand, within Ga0059261_0823 at 864.566 kb on + strand, within Ga0059261_0823 at 864.566 kb on + strand, within Ga0059261_0823 at 864.566 kb on + strand, within Ga0059261_0823 at 864.566 kb on + strand, within Ga0059261_0823 at 864.566 kb on + strand, within Ga0059261_0823 at 864.566 kb on + strand, within Ga0059261_0823 at 864.566 kb on + strand, within Ga0059261_0823 at 864.566 kb on + strand, within Ga0059261_0823 at 864.566 kb on + strand, within Ga0059261_0823 at 864.567 kb on - strand, within Ga0059261_0823 at 864.567 kb on - strand, within Ga0059261_0823 at 864.567 kb on - strand, within Ga0059261_0823 at 864.567 kb on - strand, within Ga0059261_0823 at 864.567 kb on - strand, within Ga0059261_0823 at 864.567 kb on - strand, within Ga0059261_0823 at 864.567 kb on - strand at 864.567 kb on - strand, within Ga0059261_0823 at 864.567 kb on - strand, within Ga0059261_0823 at 864.567 kb on - strand, within Ga0059261_0823 at 864.567 kb on - strand, within Ga0059261_0823 at 864.567 kb on - strand, within Ga0059261_0823 at 864.567 kb on - strand, within Ga0059261_0823 at 864.572 kb on + strand at 864.572 kb on + strand, within Ga0059261_0823 at 864.572 kb on + strand, within Ga0059261_0823 at 864.572 kb on + strand, within Ga0059261_0823 at 864.573 kb on - strand, within Ga0059261_0823 at 864.698 kb on + strand, within Ga0059261_0823 at 864.698 kb on + strand, within Ga0059261_0823 at 864.699 kb on - strand, within Ga0059261_0823 at 864.699 kb on - strand, within Ga0059261_0823 at 864.764 kb on + strand, within Ga0059261_0823 at 864.765 kb on - strand, within Ga0059261_0823 at 864.765 kb on - strand, within Ga0059261_0823 at 864.765 kb on - strand at 864.765 kb on - strand, within Ga0059261_0823 at 864.765 kb on - strand, within Ga0059261_0823 at 864.765 kb on - strand, within Ga0059261_0823 at 865.018 kb on - strand at 865.483 kb on - strand, within Ga0059261_0824 at 865.759 kb on - strand at 865.759 kb on - strand at 865.788 kb on + strand at 865.803 kb on + strand at 865.803 kb on + strand at 865.804 kb on - strand at 865.822 kb on + strand at 865.822 kb on + strand at 865.823 kb on - strand at 865.823 kb on - strand at 865.823 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.12 mg/ml remove 863,419 - +0.0 863,428 + +0.1 863,428 + +0.2 863,429 - -0.1 863,471 + -0.3 863,471 + -0.3 863,471 + +2.0 863,472 - -0.5 863,553 + Ga0059261_0821 0.26 +2.3 863,648 + Ga0059261_0821 0.47 +0.7 863,648 + Ga0059261_0821 0.47 -0.8 863,648 + Ga0059261_0821 0.47 -0.6 863,648 + Ga0059261_0821 0.47 -1.0 863,648 + Ga0059261_0821 0.47 -0.9 863,648 + Ga0059261_0821 0.47 +0.4 863,649 - Ga0059261_0821 0.47 -2.3 863,649 - Ga0059261_0821 0.47 -0.7 863,649 - Ga0059261_0821 0.47 +0.5 863,650 + Ga0059261_0821 0.48 +0.2 863,650 + Ga0059261_0821 0.48 -0.5 863,651 - Ga0059261_0821 0.48 -0.3 863,651 - Ga0059261_0821 0.48 +0.8 863,651 - Ga0059261_0821 0.48 -0.3 863,651 - Ga0059261_0821 0.48 -0.5 863,809 - Ga0059261_0821 0.83 -0.7 863,809 - Ga0059261_0821 0.83 -0.3 863,891 - -0.4 864,383 + -1.8 864,383 + -0.3 864,384 - -1.1 864,384 - +0.4 864,432 + Ga0059261_0823 0.10 -0.3 864,566 + Ga0059261_0823 0.37 -0.4 864,566 + Ga0059261_0823 0.37 +0.1 864,566 + Ga0059261_0823 0.37 -0.2 864,566 + Ga0059261_0823 0.37 -1.0 864,566 + Ga0059261_0823 0.37 +1.4 864,566 + Ga0059261_0823 0.37 -0.9 864,566 + Ga0059261_0823 0.37 +0.1 864,566 + Ga0059261_0823 0.37 -0.2 864,566 + Ga0059261_0823 0.37 -1.5 864,566 + Ga0059261_0823 0.37 -0.9 864,566 + Ga0059261_0823 0.37 -1.2 864,566 + Ga0059261_0823 0.37 +0.4 864,566 + Ga0059261_0823 0.37 -0.0 864,566 + Ga0059261_0823 0.37 -1.5 864,566 + Ga0059261_0823 0.37 +0.1 864,566 + Ga0059261_0823 0.37 -0.1 864,566 + Ga0059261_0823 0.37 -2.1 864,566 + Ga0059261_0823 0.37 +1.3 864,566 + Ga0059261_0823 0.37 +0.2 864,567 - Ga0059261_0823 0.37 +0.6 864,567 - Ga0059261_0823 0.37 -1.1 864,567 - Ga0059261_0823 0.37 +0.8 864,567 - Ga0059261_0823 0.37 -0.2 864,567 - Ga0059261_0823 0.37 -0.5 864,567 - Ga0059261_0823 0.37 -0.1 864,567 - +2.7 864,567 - Ga0059261_0823 0.37 +0.4 864,567 - Ga0059261_0823 0.37 -0.4 864,567 - Ga0059261_0823 0.37 +0.4 864,567 - Ga0059261_0823 0.37 -1.8 864,567 - Ga0059261_0823 0.37 +0.2 864,567 - Ga0059261_0823 0.37 +0.1 864,572 + +1.1 864,572 + Ga0059261_0823 0.38 +0.1 864,572 + Ga0059261_0823 0.38 +1.0 864,572 + Ga0059261_0823 0.38 -0.8 864,573 - Ga0059261_0823 0.38 -1.1 864,698 + Ga0059261_0823 0.63 -0.1 864,698 + Ga0059261_0823 0.63 -0.4 864,699 - Ga0059261_0823 0.63 +0.4 864,699 - Ga0059261_0823 0.63 -1.9 864,764 + Ga0059261_0823 0.76 -0.6 864,765 - Ga0059261_0823 0.76 -0.8 864,765 - Ga0059261_0823 0.76 +0.1 864,765 - +1.1 864,765 - Ga0059261_0823 0.76 +0.7 864,765 - Ga0059261_0823 0.76 +1.1 864,765 - Ga0059261_0823 0.76 -0.2 865,018 - +0.5 865,483 - Ga0059261_0824 0.68 -0.2 865,759 - -0.1 865,759 - +0.8 865,788 + +0.5 865,803 + -0.6 865,803 + +0.2 865,804 - +0.2 865,822 + -0.6 865,822 + -0.3 865,823 - -0.9 865,823 - -1.5 865,823 - +0.8
Or see this region's nucleotide sequence