Experiment: Sisomicin 0.12 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0625 and Ga0059261_0626 overlap by 4 nucleotides Ga0059261_0626 and Ga0059261_0627 overlap by 4 nucleotides Ga0059261_0627 and Ga0059261_0628 overlap by 4 nucleotides
Ga0059261_0625: Ga0059261_0625 - nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21), at 665,151 to 666,164
_0625
Ga0059261_0626: Ga0059261_0626 - Fructose-2,6-bisphosphatase, at 666,161 to 666,730
_0626
Ga0059261_0627: Ga0059261_0627 - cobalamin-5'-phosphate synthase (EC 2.7.8.26), at 666,727 to 667,443
_0627
Ga0059261_0628: Ga0059261_0628 - L-threonine O-3-phosphate decarboxylase (EC 4.1.1.81), at 667,440 to 668,399
_0628
Position (kb) 666
667 Strain fitness (log2 ratio) -1
0
1
2 at 665.648 kb on + strand, within Ga0059261_0625 at 665.648 kb on + strand, within Ga0059261_0625 at 665.648 kb on + strand, within Ga0059261_0625 at 665.648 kb on + strand, within Ga0059261_0625 at 665.648 kb on + strand, within Ga0059261_0625 at 665.649 kb on - strand, within Ga0059261_0625 at 665.649 kb on - strand, within Ga0059261_0625 at 665.738 kb on + strand, within Ga0059261_0625 at 666.179 kb on + strand at 666.179 kb on + strand at 666.180 kb on - strand at 666.180 kb on - strand at 666.180 kb on - strand at 666.180 kb on - strand at 666.180 kb on - strand at 666.180 kb on - strand at 666.256 kb on + strand, within Ga0059261_0626 at 666.257 kb on - strand, within Ga0059261_0626 at 666.257 kb on - strand, within Ga0059261_0626 at 666.656 kb on + strand, within Ga0059261_0626 at 666.656 kb on + strand, within Ga0059261_0626 at 666.657 kb on - strand, within Ga0059261_0626 at 666.885 kb on + strand, within Ga0059261_0627 at 667.635 kb on + strand, within Ga0059261_0628 at 667.636 kb on - strand at 667.728 kb on + strand, within Ga0059261_0628
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.12 mg/ml remove 665,648 + Ga0059261_0625 0.49 -0.6 665,648 + Ga0059261_0625 0.49 -0.6 665,648 + Ga0059261_0625 0.49 +0.5 665,648 + Ga0059261_0625 0.49 +0.5 665,648 + Ga0059261_0625 0.49 -0.5 665,649 - Ga0059261_0625 0.49 -0.2 665,649 - Ga0059261_0625 0.49 +0.1 665,738 + Ga0059261_0625 0.58 -1.0 666,179 + -0.6 666,179 + -0.4 666,180 - +1.1 666,180 - +1.8 666,180 - +0.1 666,180 - -0.5 666,180 - +0.7 666,180 - -0.3 666,256 + Ga0059261_0626 0.17 +0.2 666,257 - Ga0059261_0626 0.17 +0.9 666,257 - Ga0059261_0626 0.17 +0.4 666,656 + Ga0059261_0626 0.87 -0.0 666,656 + Ga0059261_0626 0.87 +0.1 666,657 - Ga0059261_0626 0.87 -0.2 666,885 + Ga0059261_0627 0.22 +0.4 667,635 + Ga0059261_0628 0.20 +1.1 667,636 - +1.1 667,728 + Ga0059261_0628 0.30 -0.4
Or see this region's nucleotide sequence